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berkeley_reactor_200306_biofilm_scaffold_133894

Search features with annotation key words

Displaying items 1-30 of 608 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_133894_1
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(3..128)
DNA (126bp) protein (42aa)
Proline dipeptidase id=4208447 bin=GWF2_Planctomycetes_42_9 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_biofilm_scaffold_133894_2
unknown

Not on your lists

comp(190..303)
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_133894_3
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(282..1715)
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6ARK2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN18348.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
type I phosphodiesterase / nucleotide pyrophosphatase family protein
berkeley_reactor_200306_biofilm_scaffold_133894_4
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1791..4157)
DNA (2367bp) protein (789aa)
Beta-glucosidase id=2178479 bin=GWE2_Bacteroidetes_42_39 species=Niabella soli genus=Niabella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
putative exported hydrolase
Tax=GWE2_Bacteroidetes_42_39_curated
berkeley_reactor_200306_biofilm_scaffold_133894_5
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4423..6117)
DNA (1695bp) protein (565aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZE54_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09681.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
RagB/SusD domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_133894_6
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6147..9410)
DNA (3264bp) protein (1088aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZEL7_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN09680.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
TonB-dependent receptor plug
berkeley_reactor_200306_biofilm_scaffold_133894_7
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9938..10729)
DNA (792bp) protein (264aa)
Licheninase {ECO:0000313|EMBL:AEI51225.1}; EC=3.2.1.73 {ECO:0000313|EMBL:AEI51225.1};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Licheninase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EKZ9_RUNSL
licheninase
berkeley_reactor_200306_biofilm_scaffold_133894_8
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10802..12334)
DNA (1533bp) protein (511aa)
Putative lipoprotein n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UID4_TANFA
Putative lipoprotein {ECO:0000313|EMBL:BAR47760.1}; TaxID=1307832 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella forsythia 3313.;"
putative lipoprotein
berkeley_reactor_200306_biofilm_scaffold_133894_9
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12348..15821)
DNA (3474bp) protein (1158aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UID5_TANFA
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:BAR47761.1}; TaxID=1307832 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella forsythia 3313.;"
TonB-linked outer membrane protein, SusC/RagA family
berkeley_reactor_200306_biofilm_scaffold_133894_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15989..17074)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037579F7
Uncharacterized protein {ECO:0000313|EMBL:KIC95937.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
anti-FecI sigma factor FecR
berkeley_reactor_200306_biofilm_scaffold_133894_11
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17144..17746)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003723D55
Uncharacterized protein {ECO:0000313|EMBL:KIC95936.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_biofilm_scaffold_133894_12
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17830..18696)
DNA (867bp) protein (289aa)
carbohydrate esterase (EC:3.1.1.-)
Lipase, putative esterase n=1 Tax=Algoriphagus machipongonensis RepID=A3HTI5_9BACT
Peptidase S9 {ECO:0000313|EMBL:KJF41648.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
berkeley_reactor_200306_biofilm_scaffold_133894_13
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18759..20144)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J2Y1_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL27468.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
berkeley_reactor_200306_biofilm_scaffold_133894_14
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20217..21689)
DNA (1473bp) protein (491aa)
Choline-sulfatase {ECO:0000313|EMBL:EPR65552.1}; EC=3.1.6.6 {ECO:0000313|EMBL:EPR65552.1};; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
Choline-sulfatase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V7I3_9BACT
sulfatase
berkeley_reactor_200306_biofilm_scaffold_133894_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(21837..22694)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003745F26
Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:EDY17005.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
berkeley_reactor_200306_biofilm_scaffold_133894_16
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22704..24092)
DNA (1389bp) protein (463aa)
4-aminobutyrate aminotransferase (EC:2.6.1.17 2.6.1.11 2.6.1.13)
4-aminobutyrate aminotransferase id=3730512 bin=GWC2_Bacteroidetes_40_22 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_biofilm_scaffold_133894_17
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(24213..25439)
DNA (1227bp) protein (409aa)
Putative uncharacterized protein id=4525441 bin=GWF2_Lentisphaerae_50_93 species=Clostridium clostridioforme genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
sugar kinase
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_biofilm_scaffold_133894_18
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

comp(25448..26812)
DNA (1365bp) protein (455aa)
L-fucose isomerase_2 domain protein id=4525439 bin=GWF2_Lentisphaerae_50_93 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=RBG_13_Spirochaetes_68_11_curated
berkeley_reactor_200306_biofilm_scaffold_133894_19
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27081..28286)
DNA (1206bp) protein (402aa)
Putative sugar transport-like membrane protein id=3960603 bin=GWF2_Bacteroidetes_38_335 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
sugar transport-like membrane protein
Tax=GWF2_Bacteroidetes_38_335_curated
berkeley_reactor_200306_biofilm_scaffold_133894_20
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28530..30788)
DNA (2259bp) protein (753aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GYA4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR96792.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_133894_21
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30862..32223)
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003733FAF
glycosyl hydrolase family 109
Glycosyl hydrolase family 109 {ECO:0000313|EMBL:AKD56551.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_biofilm_scaffold_133894_22
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(32406..33479)
DNA (1074bp) protein (358aa)
Peptidase M19 renal dipeptidase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ERM1_EMTOG
peptidase M19 renal dipeptidase
Peptidase M19 renal dipeptidase {ECO:0000313|EMBL:AFK02324.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
berkeley_reactor_200306_biofilm_scaffold_133894_23
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33481..34500)
DNA (1020bp) protein (340aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AEI51396.1}; EC=1.1.1.35 {ECO:0000313|EMBL:AEI51396.1};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00036534C8
3-hydroxyacyl-CoA dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_133894_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34595..35320)
DNA (726bp) protein (242aa)
short-chain dehydrogenase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003720644
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACT94255.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_biofilm_scaffold_133894_25
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35479..36507
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382A239
Contig119, whole genome shotgun sequence {ECO:0000313|EMBL:KIO74997.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
LacI family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_133894_26
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37597..38259)
DNA (663bp) protein (221aa)
UspA n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GYD2_9SPHI
UspA {ECO:0000313|EMBL:EOR96643.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
UspA domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_133894_27
unknown

Not on your lists

comp(38320..38433)
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_133894_28
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38683..39564)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036CD8AB
AraC family transcriptional regulator {ECO:0000313|EMBL:KDN53946.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_133894_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39951..40553
DNA (603bp) protein (201aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8D8_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV99108.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_133894_30
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

40673..41860
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00035D3DA2
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:EHQ25197.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
FecR protein
Displaying items 1-30 of 608 in total

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