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berkeley_reactor_200306_biofilm_scaffold_26343

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_26343_1
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..315)
DNA (315bp) protein (105aa)
Oxidoreductase domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y0F9_PEDHD
Contig55, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76768.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_26343_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(359..1606)
DNA (1248bp) protein (416aa)
Nucleoside:H symporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF4_9BACT
Nucleoside H+ symporter
Tax=RBG_16_Gemmatimonadetes_66_8_curated
berkeley_reactor_200306_biofilm_scaffold_26343_3
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1635..3002)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003829ABE
Uncharacterized protein {ECO:0000313|EMBL:EON77855.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_26343_4
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3120..6197)
DNA (3078bp) protein (1026aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A3021
Electron transport protein {ECO:0000313|EMBL:EPR67932.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
membrane-bound dehydrogenase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_26343_5
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6248..7693)
DNA (1446bp) protein (482aa)
Alkaline ceramidase domain protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V6G6_9BACT
Alkaline ceramidase domain protein {ECO:0000313|EMBL:EPR65536.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_26343_6
unknown

Not on your lists

comp(7729..7905)
DNA (177bp) protein (59aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_26343_7
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(7943..9469)
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745E71
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_biofilm_scaffold_26343_8

Not on your lists

comp(9592..10863)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Rhodopirellula europaea SH398 RepID=M5S6H7_9PLAN
Marine sediment metagenome DNA, contig: S01H1_L01022 {ECO:0000313|EMBL:GAF73688.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_26343_9
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11502..12101)
DNA (600bp) protein (200aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y4T9_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIM36839.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_biofilm_scaffold_26343_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12402..13463)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003600108
L-threonine aldolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_biofilm_scaffold_26343_11
unknown

Not on your lists

comp(13553..13684)
DNA (132bp) protein (44aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_26343_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13753..14610
DNA (858bp) protein (286aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NPV4_9SPHI
RNA polymerase sigma factor rpoD
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:AHF14910.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_26343_13
unknown

Not on your lists

14744..14950
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_26343_14
unknown

Not on your lists

14965..15096
DNA (132bp) protein (44aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_26343_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15164..16111
DNA (948bp) protein (316aa)
Thioredoxin reductase {ECO:0000313|EMBL:AEV97289.1}; EC=1.8.1.9 {ECO:0000313|EMBL:AEV97289.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Thioredoxin reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE98_NIAKG
thioredoxin reductase
berkeley_reactor_200306_biofilm_scaffold_26343_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16172..16531
DNA (360bp) protein (120aa)
Dihydroneopterin aldolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE99_NIAKG
dihydroneopterin aldolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_biofilm_scaffold_26343_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16528..17280
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FDDCC
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_biofilm_scaffold_26343_18
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17382..19331
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VSI9_9SPHI
peptidase M1
Peptidase M1 {ECO:0000313|EMBL:AIM36603.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_biofilm_scaffold_26343_19
GWA1_OD1_35_8_very_partial, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

19328..19621
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVM2_NITWN
Uncharacterized protein {ECO:0000313|EMBL:KKP85692.1}; TaxID=1618727 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA1_35_8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_26343_20
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19673..21823
DNA (2151bp) protein (717aa)
Quinoprotein glucose dehydrogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKA0_CHIPD
Putative oxidoreductase {ECO:0000313|EMBL:GAO44857.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
quinoprotein glucose dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_26343_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22245..22991)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000369D51A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU63235.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_26343_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23061..23999)
DNA (939bp) protein (313aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Niabella soli DSM 19437 RepID=H1NRK5_9SPHI
xylose isomerase
Xylose isomerase {ECO:0000313|EMBL:AHF15477.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_26343_23
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24231..25823)
DNA (1593bp) protein (531aa)
Peptide chain release factor 3 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDB6_NIAKG
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
peptide chain release factor 3 (bRF-3)
berkeley_reactor_200306_biofilm_scaffold_26343_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25851..28370)
DNA (2520bp) protein (840aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003816385
Zinc carboxypeptidase {ECO:0000313|EMBL:KIC89434.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
peptidase M14 carboxypeptidase A
berkeley_reactor_200306_biofilm_scaffold_26343_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28472..30199
DNA (1728bp) protein (576aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:AEV96803.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AEV96803.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Gamma-glutamyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQR9_NIAKG
gamma-glutamyltransferase
berkeley_reactor_200306_biofilm_scaffold_26343_26
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30594..31070
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5B8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KEQ29002.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_26343_27
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31187..31513)
DNA (327bp) protein (109aa)
Small multidrug resistance protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5L9_SPHS2
small multidrug resistance protein
Small multidrug resistance protein {ECO:0000313|EMBL:ADZ79828.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_biofilm_scaffold_26343_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31609..32178)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEB7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98327.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_26343_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32282..32821
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQR8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96802.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_26343_30
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33009..37805
DNA (4797bp) protein (1599aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQR5_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO43306.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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