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berkeley_reactor_200306_biofilm_scaffold_37162

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Displaying items 1-30 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_37162_1
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..1313)
DNA (1311bp) protein (437aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EFK35882.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EFK35882.1};; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
copper-translocating P-type ATPase (EC:3.6.3.4)
Copper-exporting ATPase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X1_9FLAO
berkeley_reactor_200306_biofilm_scaffold_37162_2
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1402..1965)
DNA (564bp) protein (188aa)
Transcriptional regulator, AraC family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64129.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_37162_3
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2081..2905)
DNA (825bp) protein (275aa)
RteC protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64130.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
Tetracycline regulation of excision, RteC
berkeley_reactor_200306_biofilm_scaffold_37162_4
unknown

Not on your lists

comp(3040..3240)
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_37162_5
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3275..5320)
DNA (2046bp) protein (682aa)
Cadmium-exporting ATPase {ECO:0000313|EMBL:EFK35885.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EFK35885.1};; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
ATPase P (EC:3.6.3.5)
Cadmium-exporting ATPase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X4_9FLAO
berkeley_reactor_200306_biofilm_scaffold_37162_6
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5338..6618)
DNA (1281bp) protein (427aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X5_9FLAO
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EFK35886.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
RND family efflux transporter MFP subunit
berkeley_reactor_200306_biofilm_scaffold_37162_7
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6626..10993)
DNA (4368bp) protein (1456aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X6_9FLAO
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:EFK35887.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
heavy metal efflux pump
berkeley_reactor_200306_biofilm_scaffold_37162_8
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11526..11885)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64135.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
Zinc uptake regulation protein ZUR
berkeley_reactor_200306_biofilm_scaffold_37162_9
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11943..12281)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64136.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_10
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12351..12560)
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2FXA1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EKF53818.1}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_11
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12560..13162)
DNA (603bp) protein (201aa)
Heavy metal-associated domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G218_9SPHI
putative copper-transporting ATPase
Putative copper-transporting ATPase {ECO:0000313|EMBL:AIL45310.1}; TaxID=1338011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis NUHP1.;"
berkeley_reactor_200306_biofilm_scaffold_37162_12
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13159..13533)
DNA (375bp) protein (125aa)
ArsR family transcriptional regulator n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S1C7_9FLAO
Arsenical resistance operon repressor
Arsenical resistance operon repressor {ECO:0000313|EMBL:AIL45311.1}; TaxID=1338011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis NUHP1.;"
berkeley_reactor_200306_biofilm_scaffold_37162_13
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13630..15630)
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S636_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:GAE64139.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_14
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15732..17018)
DNA (1287bp) protein (429aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZX4_9FLAO
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EFK33904.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
relaxase/mobilization nuclease family protein
berkeley_reactor_200306_biofilm_scaffold_37162_15
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17026..17457)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZX5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK33905.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
uncharacterized protein
berkeley_reactor_200306_biofilm_scaffold_37162_16
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18210..18977
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0M8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64142.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
chromosome partitioning ATPase
berkeley_reactor_200306_biofilm_scaffold_37162_17
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18982..19431
DNA (450bp) protein (150aa)
Uncharacterized protein n=2 Tax=Sphingobacteriaceae RepID=F0S628_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:GAE64143.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_18
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19443..20078
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0N0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64144.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_19
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20095..20907)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S624_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52127.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_biofilm_scaffold_37162_20
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20908..22683)
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S623_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:ADY52126.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_21
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22673..22963)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S622_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52125.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_biofilm_scaffold_37162_22
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22966..23856)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S621_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52124.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_biofilm_scaffold_37162_23
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23864..24079)
DNA (216bp) protein (72aa)
Helix-turn-helix domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S620_PEDSD
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADY52123.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_biofilm_scaffold_37162_24
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24337..24642
DNA (306bp) protein (102aa)
Uncharacterized protein n=3 Tax=Bacteroidetes RepID=F0S619_PEDSD
hypothetical protein
Conjugative transposon protein TraE {ECO:0000313|EMBL:EFK56940.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
berkeley_reactor_200306_biofilm_scaffold_37162_25
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24654..24983
DNA (330bp) protein (110aa)
Conjugative transposon protein TraF n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0N8_9FLAO
Conjugative transposon protein TraF {ECO:0000313|EMBL:EFK34037.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
conjugal transfer protein TraF
berkeley_reactor_200306_biofilm_scaffold_37162_26
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24980..27484
DNA (2505bp) protein (835aa)
Type IV secretory pathway VirB4 components-like protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S617_PEDSD
Type IV secretory pathway VirB4 components-like protein {ECO:0000313|EMBL:ADY52120.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
type IV secretory pathway VirB4 components-like protein
berkeley_reactor_200306_biofilm_scaffold_37162_27
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27513..28145
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNM0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAE64154.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_28
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28149..29144
DNA (996bp) protein (332aa)
Conjugative transposon TraJ protein n=2 Tax=Bacteroidetes RepID=C2G248_9SPHI
Bacteroides conjugative transposon TraJ protein {ECO:0000313|EMBL:CDT25314.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
TraJ family protein conjugative transposon
berkeley_reactor_200306_biofilm_scaffold_37162_29
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29165..29788
DNA (624bp) protein (208aa)
Conjugative transposon TraK protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FRZ1_9SPHI
Conjugative transposon TraK protein {ECO:0000313|EMBL:EEI94356.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_37162_30
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29801..30229
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S613_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:GAE64157.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
Displaying items 1-30 of 297 in total

View Taxonomy