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berkeley_reactor_200306_biofilm_scaffold_15528

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_15528_1
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..222
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJR9_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53767.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_2
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(264..785)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GWZ0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR96271.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_3
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

Not on your lists

1034..1510
DNA (477bp) protein (159aa)
Putative uncharacterized protein id=1829077 bin=GWE2_Bacteroidetes_29_8 species=Zunongwangia profunda genus=Zunongwangia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Tax=GWE2_Bacteroidetes_29_8_curated
berkeley_reactor_200306_biofilm_scaffold_15528_4
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1647..1985
DNA (339bp) protein (113aa)
Carbamoyl phosphate synthetase n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS2_ZUNPS
Carbamoyl phosphate synthetase {ECO:0000313|EMBL:KGO80803.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
carbamoyl phosphate synthetase
berkeley_reactor_200306_biofilm_scaffold_15528_5
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1998..2426
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS3_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53771.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_6
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2462..8002
DNA (5541bp) protein (1847aa)
Putative DNA methylase n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS4_ZUNPS
DNA methylase
Putative DNA methylase {ECO:0000313|EMBL:ADF53772.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_7
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8023..8352
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3165E
Uncharacterized protein {ECO:0000313|EMBL:KGO93669.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_8
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8349..9164
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZY0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CDT10521.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_9
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9215..11683
DNA (2469bp) protein (823aa)
Type IV secretory pathway VirB4 components-like protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS6_ZUNPS
Conjugal transfer protein TraG {ECO:0000313|EMBL:KGO80807.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
type IV secretory pathway VirB4 components-like protein
berkeley_reactor_200306_biofilm_scaffold_15528_10
unknown

Not on your lists

11695..12084
DNA (390bp) protein (130aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_15528_11
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12088..12762
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS7_ZUNPS
Conjugal transfer protein TraI {ECO:0000313|EMBL:KGO80808.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_12
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12749..13423
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS8_ZUNPS
Uncharacterized protein {ECO:0000313|EMBL:KGO80809.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_13
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13426..14064
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJS9_ZUNPS
Uncharacterized protein {ECO:0000313|EMBL:KGO80810.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_14
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14075..15286
DNA (1212bp) protein (404aa)
TraJ family protein conjugative transposon n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT0_ZUNPS
Conjugal transfer protein TraJ {ECO:0000313|EMBL:KGO80811.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
TraJ family protein conjugative transposon
berkeley_reactor_200306_biofilm_scaffold_15528_15
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15305..15928
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT1_ZUNPS
Conjugal transfer protein {ECO:0000313|EMBL:KGO80812.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_16
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15940..16422
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT2_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53780.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_17
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16425..17732
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT3_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53781.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_18
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17762..18604
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT4_ZUNPS
Conjugative transposon protein TraN {ECO:0000313|EMBL:KGO80815.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_19
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18671..19828
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJT5_ZUNPS
Uncharacterized protein {ECO:0000313|EMBL:KGO80816.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_20
unknown

Not on your lists

19916..20665
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037CD649
berkeley_reactor_200306_biofilm_scaffold_15528_21
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20687..21739
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1KXZ0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF17736.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_15528_22
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21755..22048
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJW2_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53810.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_23
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22121..22315
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJW3_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF53811.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
berkeley_reactor_200306_biofilm_scaffold_15528_24
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22326..23885
DNA (1560bp) protein (520aa)
Site-specific recombinase n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJW4_ZUNPS
site-specific recombinase
Tax=GWF2_Bacteroidetes_43_11_curated
berkeley_reactor_200306_biofilm_scaffold_15528_25
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23891..25453)
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEP8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS93375.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
filamentation induced by cAMP protein fic
berkeley_reactor_200306_biofilm_scaffold_15528_26
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25472..27187
DNA (1716bp) protein (572aa)
Site-specific recombinase n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJW4_ZUNPS
site-specific recombinase
Tax=GWF2_Bacteroidetes_43_11_curated
Displaying 26 items

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