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berkeley_reactor_200306_biofilm_scaffold_45661

Search features with annotation key words

Displaying items 1-30 of 484 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_45661_1
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..381
DNA (381bp) protein (127aa)
Phage/plasmid-related protein TIGR03299 n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FS12_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS91610.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
alpha/beta hydrolase
berkeley_reactor_200306_biofilm_scaffold_45661_2
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

438..815
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDT5_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ24275.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_45661_3
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

827..1060
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RS69_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ16721.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
berkeley_reactor_200306_biofilm_scaffold_45661_4
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1126..1719
DNA (594bp) protein (198aa)
Prtrc system protein e n=1 Tax=Flavobacterium sp. F52 RepID=J1KVW9_9FLAO
prtrc system protein e
Prtrc system protein e {ECO:0000313|EMBL:AIM38416.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_biofilm_scaffold_45661_5
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1738..1956
DNA (219bp) protein (73aa)
PRTRC system protein C n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W5D6_9FLAO
PRTRC system protein C {ECO:0000313|EMBL:EFK33158.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
PRTRC system protein C
berkeley_reactor_200306_biofilm_scaffold_45661_6
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1974..3128
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037ADFFE
Uncharacterized protein {ECO:0000313|EMBL:CDS91603.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_45661_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3139..3855
DNA (717bp) protein (239aa)
PRTRC system protein B n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNK0_9SPHI
PRTRC system protein B {ECO:0000313|EMBL:EFK57497.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_45661_8
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3852..4865
DNA (1014bp) protein (338aa)
PRTRC system ThiF family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FS05_9SPHI
thiamine biosynthesis protein ThiF
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:AIM38412.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_biofilm_scaffold_45661_9
unknown

Not on your lists

comp(4895..5299)
DNA (405bp) protein (135aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_45661_10
Shewanella woodyi, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5360..5908)
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KK86_SHEWM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA88717.1}; TaxID=392500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella woodyi (strain ATCC 51908 / MS32).;"
berkeley_reactor_200306_biofilm_scaffold_45661_11
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6086..7204
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTE0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK57041.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_45661_12
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7209..7865
DNA (657bp) protein (219aa)
Uncharacterized protein {ECO:0000313|EMBL:KGO78798.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
berkeley_reactor_200306_biofilm_scaffold_45661_13
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8066..8944)
DNA (879bp) protein (293aa)
Transporter n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PTY3_ELIME
Transporter {ECO:0000313|EMBL:KGO09026.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
Permease of the drug/metabolite transporter (DMT) superfamily
berkeley_reactor_200306_biofilm_scaffold_45661_14
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8992..9528)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KKV8_SOLCM
ATPase {ECO:0000313|EMBL:KIX20209.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_45661_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9532..9900)
DNA (369bp) protein (123aa)
Putative transcriptional regulator n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KKV9_SOLCM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFD08592.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_biofilm_scaffold_45661_16
unknown

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10101..10457
DNA (357bp) protein (119aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_45661_17
unknown

Not on your lists

comp(10505..11026)
DNA (522bp) protein (174aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_45661_18
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11176..12690)
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364A3BC
Serine protease {ECO:0000313|EMBL:KIC89378.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
protease Do
berkeley_reactor_200306_biofilm_scaffold_45661_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13358..14359)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037B1BFC
acyl-CoA reductase
Acyl-CoA reductase {ECO:0000313|EMBL:AEV96713.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_45661_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14438..14785
DNA (348bp) protein (116aa)
ferredoxin n=1 Tax=Segetibacter koreensis RepID=UPI00037C6663
Ferredoxin {ECO:0000313|EMBL:KIC93316.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
4Fe-4S ferredoxin
berkeley_reactor_200306_biofilm_scaffold_45661_21

Not on your lists

15069..15425
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA17725.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein id=2106258 bin=GWD2_Bacteroidetes_33_33 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_45661_22

Not on your lists

15480..16481
DNA (1002bp) protein (334aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
D-alanine--D-alanine ligase n=1 Tax=Segetibacter koreensis RepID=UPI0003811A96
D-alanine--D-alanine ligase
berkeley_reactor_200306_biofilm_scaffold_45661_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16541..17383
DNA (843bp) protein (281aa)
PASTA domain containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPB2_NIAKG
Penicillin-binding protein {ECO:0000313|EMBL:KIC93314.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
PASTA domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_45661_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17419..17727
DNA (309bp) protein (103aa)
Rhodanese domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEF3_CHIPD
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ACU63362.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_45661_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18105..20126
DNA (2022bp) protein (674aa)
Polysaccharide biosynthesis protein CapD n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEY3_NIAKG
polysaccharide biosynthesis protein CapD
Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:AEW01571.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_45661_26
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

20354..20641
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00036704F6
Stress responsive A/B Barrel Domain-containing protein
Tax=RBG_16_Spirochaete_67_19_curated
berkeley_reactor_200306_biofilm_scaffold_45661_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20647..22698)
DNA (2052bp) protein (684aa)
OmpA/MotB domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH66_CHIPD
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ACU58045.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_45661_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22711..23703)
DNA (993bp) protein (331aa)
Putative membrane protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQW9_NIAKG
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AEV97868.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_45661_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23719..24543)
DNA (825bp) protein (275aa)
Fibronectin type III domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH68_CHIPD
fibronectin type III domain-containing protein
Fibronectin type III domain protein {ECO:0000313|EMBL:ACU58047.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_45661_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24773..25210
DNA (438bp) protein (146aa)
Putative signal transduction protein with CBS domains n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGJ1_NIAKG
putative signal transduction protein with CBS domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:AEV97414.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 484 in total

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