ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_46111

Search features with annotation key words

Displaying items 1-30 of 250 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_46111_1
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..332
DNA (330bp) protein (110aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ADX67673.1}; EC=5.1.3.2 {ECO:0000313|EMBL:ADX67673.1};; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
UDP-glucose 4-epimerase n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P1W3_WEEVC
berkeley_reactor_200306_biofilm_scaffold_46111_2
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

351..941
DNA (591bp) protein (197aa)
Acetyltransferase, CysE/LacA/LpxA/NodL family n=3 Tax=Bacteroidales RepID=D7IWN0_9BACE
acetyltransferase
Uncharacterized protein {ECO:0000313|EMBL:EKN24399.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
berkeley_reactor_200306_biofilm_scaffold_46111_3
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

934..2358
DNA (1425bp) protein (475aa)
O-antigen repeat unit transporter n=2 Tax=Parabacteroides distasonis RepID=A6L812_PARD8
O-antigen repeat-containing transporter
Uncharacterized protein {ECO:0000313|EMBL:EKN24400.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
berkeley_reactor_200306_biofilm_scaffold_46111_4
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

2441..3565
DNA (1125bp) protein (375aa)
Phosphatidylinositol glycan-class A n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TNV5_METAC
pigA; phosphatidylinositol glycan-class A
Tax=GWA2_RIF03_38_11_curated
berkeley_reactor_200306_biofilm_scaffold_46111_5
Anoxybacillus flavithermus, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3552..4052
DNA (501bp) protein (167aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=491915 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus flavithermus (strain DSM 21510 / WK1).;"
Serine acetyltransferase n=1 Tax=Anoxybacillus flavithermus NBRC 109594 RepID=R4FEI7_9BACI
cysE; serine acetyltransferase
berkeley_reactor_200306_biofilm_scaffold_46111_6
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4175..5293
DNA (1119bp) protein (373aa)
Glycosyltransferase, family I n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NNZ5_DESTT
glycosyltransferase, family I
Glycosyltransferase, family I {ECO:0000313|EMBL:CCK81818.1}; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="Desulfobacula toluolica (strain DSM 7467 / Tol2).;"
berkeley_reactor_200306_biofilm_scaffold_46111_7
unknown

Not on your lists

5290..6621
DNA (1332bp) protein (444aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_46111_8
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6857..7948
DNA (1092bp) protein (364aa)
Predicted glycosyltransferase, family I n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NS56_DESTT
glycosyl transferase
Predicted glycosyltransferase, family I {ECO:0000313|EMBL:CCK81817.1}; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="Desulfobacula toluolica (strain DSM 7467 / Tol2).;"
berkeley_reactor_200306_biofilm_scaffold_46111_9
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8244..9323
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000361EAE5
Uncharacterized protein {ECO:0000313|EMBL:EIY61191.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46111_10
Zobellia galactanivorans, Zobellia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9374..11356
DNA (1983bp) protein (661aa)
polysaccharide lyase (EC:4.2.2.-)
Polysaccharide lyase, family PL12 {ECO:0000313|EMBL:CAZ96066.1}; EC=4.2.2.- {ECO:0000313|EMBL:CAZ96066.1};; TaxID=63186 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zobellia.;" source="Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871; / Dsij).;"
Polysaccharide lyase, family PL12 n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L5A0_ZOBGA
berkeley_reactor_200306_biofilm_scaffold_46111_11
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11368..12735
DNA (1368bp) protein (456aa)
Nucleotide sugar dehydrogenase id=3306174 bin=GWF2_Bacteroidetes_41_9 species=Clostridium sp. Maddingley MBC34-26 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
GDP-mannose dehydrogenase
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_biofilm_scaffold_46111_12
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12698..13885
DNA (1188bp) protein (396aa)
Glycosyl transferase group 1 id=3306181 bin=GWF2_Bacteroidetes_41_9 species=Formosa sp. AK20 genus=Formosa taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
group 1 glycosyl transferase
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_biofilm_scaffold_46111_13
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13966..14766
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GQI2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR94087.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46111_14
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14955..15224)
DNA (270bp) protein (90aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YBS7_9SPHI
Transposase {ECO:0000313|EMBL:EHQ28796.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
transposase IS116/IS110/IS902 family protein
berkeley_reactor_200306_biofilm_scaffold_46111_15
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15604..17115
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EI36_9SPHI
Contig33, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77546.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46111_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17511..18851)
DNA (1341bp) protein (447aa)
Glutamate dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSG9_9SPHI
glutamate dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_46111_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19198..22074)
DNA (2877bp) protein (959aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
carbamoyl phosphate synthase large subunit n=1 Tax=Niabella aurantiaca RepID=UPI0003613024
carbamoyl phosphate synthase large subunit
berkeley_reactor_200306_biofilm_scaffold_46111_18
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22423..23667)
DNA (1245bp) protein (415aa)
L-fucose:H+ symporter permease n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVT6_SOLCM
L-fucose:H+ symporter permease
L-fucose:H+ symporter permease {ECO:0000313|EMBL:AFD06709.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_biofilm_scaffold_46111_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23695..24474)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCA6_CHIPD
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU59489.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_46111_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24521..25342)
DNA (822bp) protein (274aa)
Amidohydrolase 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJY8_NIAKG
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:AEW02926.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_46111_21
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(25405..25836)
DNA (432bp) protein (144aa)
S23 ribosomal protein id=2618939 bin=GWF2_Bacteroidetes_43_63 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
S23 ribosomal protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
berkeley_reactor_200306_biofilm_scaffold_46111_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25932..26603)
DNA (672bp) protein (224aa)
G-D-S-L family lipolytic protein n=1 Tax=Rudanella lutea RepID=UPI00036AE57E
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:AEV96787.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_46111_23
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26614..26946)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C2L8_9FLAO
Contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21353.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_46111_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27058..27972)
DNA (915bp) protein (305aa)
Ureidoglycolate lyase {ECO:0000313|EMBL:AEW02928.1}; EC=4.3.2.3 {ECO:0000313|EMBL:AEW02928.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Ureidoglycolate lyase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJZ0_NIAKG
ureidoglycolate lyase
berkeley_reactor_200306_biofilm_scaffold_46111_25
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28021..31482
DNA (3462bp) protein (1154aa)
Methylmalonyl-CoA mutase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMM2_CHIPD
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:KIC94705.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
methylmalonyl-CoA mutase
berkeley_reactor_200306_biofilm_scaffold_46111_26
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31991..33229
DNA (1239bp) protein (413aa)
Fatty acid hydroxylase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EX06_EMTOG
Sterol desaturase {ECO:0000313|EMBL:KIC93677.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
fatty acid hydroxylase
berkeley_reactor_200306_biofilm_scaffold_46111_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33412..34371
DNA (960bp) protein (320aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT3_NIAKG
23S rRNA m(2)A-2503 methyltransferase
berkeley_reactor_200306_biofilm_scaffold_46111_28
unknown

Not on your lists

34402..34605
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_46111_29
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

34605..34793
DNA (189bp) protein (63aa)
PilT protein domain protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TWD8_9CYAN
PilT protein domain-containing protein
PilT protein domain protein {ECO:0000313|EMBL:AFY86875.1}; TaxID=251229 species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
berkeley_reactor_200306_biofilm_scaffold_46111_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34826..36010
DNA (1185bp) protein (395aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Pseudouridine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT1_NIAKG
pseudouridine synthase Rsu
Displaying items 1-30 of 250 in total

View Taxonomy