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berkeley_reactor_200306_biofilm_scaffold_47405

Search features with annotation key words

Displaying items 1-30 of 303 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_47405_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

422..1657
DNA (1236bp) protein (412aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91307.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RHS repeat-associated core domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_47405_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1680..2231
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMU2_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU60376.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_47405_3
Tannerella sp. CAG:51, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2557..3084
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:51 RepID=R7DGE3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD89038.1}; TaxID=1262979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:51.;"
berkeley_reactor_200306_biofilm_scaffold_47405_4
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3128..3448)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Anaerophaga thermohalophila RepID=UPI000380A2A6
Uncharacterized protein {ECO:0000313|EMBL:ELR68283.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
XRE family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_47405_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3807..5804)
DNA (1998bp) protein (666aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000379CAAA
Uncharacterized protein {ECO:0000313|EMBL:AHF16813.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_47405_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5823..8981)
DNA (3159bp) protein (1053aa)
TonB-dependent receptor plug n=1 Tax=Niabella soli DSM 19437 RepID=H1NTM8_9SPHI
TonB-linked outer membrane protein
TonB-linked outer membrane protein {ECO:0000313|EMBL:AHF16812.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_47405_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9004..9753)
DNA (750bp) protein (250aa)
Transcriptional regulator, DeoR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8M4_NIAKG
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AEW00196.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_47405_8
unknown

Not on your lists

comp(9969..10580)
DNA (612bp) protein (204aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_47405_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10808..13291
DNA (2484bp) protein (828aa)
MscS Mechanosensitive ion channel n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFM3_NIAKG
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:AEV99462.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_47405_10
Chryseobacterium solincola, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13398..14558
DNA (1161bp) protein (387aa)
Calcium/proton antiporter n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11TL9_CYTH3
Ionic transporter y4hA {ECO:0000313|EMBL:KIA82578.1}; TaxID=510955 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium solincola.;"
chaA; calcium/proton antiporter
berkeley_reactor_200306_biofilm_scaffold_47405_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14682..15581
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F7928
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17986.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_47405_12
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15809..16258
DNA (450bp) protein (150aa)
Transcriptional regulator, MarR family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W1U4_9FLAO
MarR family transcriptional regulator {ECO:0000313|EMBL:KFF11003.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
marR2; MarR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_47405_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16259..17839
DNA (1581bp) protein (527aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6W1_NIAKG
EmrB/QacA subfamily drug resistance transporter
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AEV97964.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_47405_14
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18146..18715
DNA (570bp) protein (190aa)
RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTN4_9SPHI
RNA polymerase {ECO:0000313|EMBL:KIA96510.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
RNA polymerase sigma-70 factor
berkeley_reactor_200306_biofilm_scaffold_47405_15
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18847..19869
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HU70_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59037.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
anti-feci sigma factor, fecr
berkeley_reactor_200306_biofilm_scaffold_47405_16
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20019..23447
DNA (3429bp) protein (1143aa)
TonB-dependent receptor n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J419_CYCMS
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEL26685.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
berkeley_reactor_200306_biofilm_scaffold_47405_17
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23458..25137
DNA (1680bp) protein (560aa)
Putative nutrient binding outer membrane protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WKQ9_9BACT
Putative nutrient binding outer membrane protein {ECO:0000313|EMBL:EPR67299.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
RagB/SusD domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_47405_18
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25355..27550
DNA (2196bp) protein (732aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F6E05
xylan esterase
Tax=RBG_13_Bacteroidetes_42_15_curated
berkeley_reactor_200306_biofilm_scaffold_47405_19
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27596..29797
DNA (2202bp) protein (734aa)
Xylan esterase id=4252902 bin=GWC2_Bacteroidetes_40_22 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
xylan esterase
Tax=RBG_13_Bacteroidetes_42_15_curated
berkeley_reactor_200306_biofilm_scaffold_47405_20
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29869..31434
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035EAE33
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK02382.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
berkeley_reactor_200306_biofilm_scaffold_47405_21
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31506..32879
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003624BDC
oxidoreductase domain-containing protein
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_biofilm_scaffold_47405_22
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32969..34159
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366EF21
hypothetical protein
Tax=GWE2_Bacteroidetes_42_39_curated
berkeley_reactor_200306_biofilm_scaffold_47405_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34277..35575
DNA (1299bp) protein (433aa)
FolC bifunctional protein {ECO:0000313|EMBL:AEV98442.1}; EC=6.3.2.17 {ECO:0000313|EMBL:AEV98442.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
FolC bifunctional protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFL1_NIAKG
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
berkeley_reactor_200306_biofilm_scaffold_47405_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36081..36965
DNA (885bp) protein (295aa)
Fructosamine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTL2_CHIPD
fructosamine kinase
Fructosamine kinase {ECO:0000313|EMBL:ACU62769.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_47405_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37021..37407)
DNA (387bp) protein (129aa)
Nuclear protein SET n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPC7_NIAKG
nuclear protein SET
Nuclear protein SET {ECO:0000313|EMBL:AEV96733.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_47405_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37495..38886
DNA (1392bp) protein (464aa)
Magnesium transporter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPC6_NIAKG
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
magnesium transporter
berkeley_reactor_200306_biofilm_scaffold_47405_27
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39300..40670
DNA (1371bp) protein (457aa)
alpha-L-fucosidase n=1 Tax=Segetibacter koreensis RepID=UPI0003713148
Alpha-L-fucosidase {ECO:0000313|EMBL:KIA96393.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
alpha-L-fucosidase
berkeley_reactor_200306_biofilm_scaffold_47405_28
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

40676..42643
DNA (1968bp) protein (656aa)
Alpha-L-fucosidase {ECO:0000313|EMBL:ADZ77236.1}; EC=3.2.1.51 {ECO:0000313|EMBL:ADZ77236.1};; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Alpha-L-fucosidase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C9U6_SPHS2
alpha-L-fucosidase
berkeley_reactor_200306_biofilm_scaffold_47405_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(42725..45775)
DNA (3051bp) protein (1017aa)
AsmA family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ39_NIAKG
AsmA family protein
AsmA family protein {ECO:0000313|EMBL:AEV97556.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_47405_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

45852..46463
DNA (612bp) protein (204aa)
tRNA guanosine-2'-O-methyltransferase {ECO:0000313|EMBL:AEV97557.1}; EC=2.1.1.34 {ECO:0000313|EMBL:AEV97557.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
tRNA guanosine-2'-O-methyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ40_NIAKG
tRNA guanosine-2'-O-methyltransferase
Displaying items 1-30 of 303 in total

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