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berkeley_reactor_200306_biofilm_scaffold_48346

Search features with annotation key words

Displaying items 1-30 of 237 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_48346_1
unknown

Not on your lists

2..112
DNA (111bp) protein (37aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_2
unknown

Not on your lists

comp(150..746)
DNA (597bp) protein (199aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_3
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(739..2148)
DNA (1410bp) protein (470aa)
RHS repeat-associated core domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDZ1_9SPHI
RHS repeat-associated core domain-containing protein {ECO:0000313|EMBL:EHQ24331.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
RHS repeat-associated core domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_48346_4
unknown

Not on your lists

comp(2269..2421)
DNA (153bp) protein (51aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_5
unknown

Not on your lists

comp(2366..2836)
DNA (471bp) protein (157aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2839..4203)
DNA (1365bp) protein (455aa)
RHS repeat-associated core domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDZ1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO44102.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
RHS repeat-associated core domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_48346_7
Bacteroides sp. CAG:661, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4464..5042)
DNA (579bp) protein (193aa)
Putative fiber protein n=1 Tax=Bacteroides sp. CAG:661 RepID=R5SRF0_9BACE
Putative fiber protein {ECO:0000313|EMBL:CCZ49321.1}; TaxID=1262746 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:661.;"
fiber protein
berkeley_reactor_200306_biofilm_scaffold_48346_8
unknown

Not on your lists

comp(5475..6134)
DNA (660bp) protein (220aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_9
unknown

Not on your lists

comp(6137..6361)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_10
unknown

Not on your lists

comp(6324..6626)
DNA (303bp) protein (101aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_11
unknown

Not on your lists

comp(6767..7525)
DNA (759bp) protein (253aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_12
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7530..16280)
DNA (8751bp) protein (2917aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGR4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM35226.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48346_13
unknown

Not on your lists

comp(16299..17051)
DNA (753bp) protein (251aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_14
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17087..23668)
DNA (6582bp) protein (2194aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YES4_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ24341.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48346_15
unknown

Not on your lists

comp(23679..24176)
DNA (498bp) protein (166aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_16
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24186..25259)
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YES6_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ24343.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48346_17
unknown

Not on your lists

comp(25277..27682)
DNA (2406bp) protein (802aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_18
unknown

Not on your lists

comp(27914..28006)
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_19
Capnocytophaga sp. oral taxon 335, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28631..28915
DNA (285bp) protein (95aa)
Glycosyltransferase family 6 n=1 Tax=Capnocytophaga sp. oral taxon 335 str. F0486 RepID=J0MZK3_9FLAO
Glycosyltransferase family 6 {ECO:0000313|EMBL:EJF37547.1}; TaxID=1125720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 335 str. F0486.;"
glycosyltransferase
berkeley_reactor_200306_biofilm_scaffold_48346_20
Paenibacillus sp. FSL R7-277, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29380..30912)
DNA (1533bp) protein (511aa)
Ca2+-binding protein, RTX toxin n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TCD9_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETT73028.1}; TaxID=1227352 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-277.;"
Ca2+-binding protein, RTX toxin
berkeley_reactor_200306_biofilm_scaffold_48346_21
unknown

Not on your lists

comp(30993..31466)
DNA (474bp) protein (158aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_22
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31607..33241)
DNA (1635bp) protein (545aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI0003498BFD
putative AP superfamily protein
Putative AP superfamily protein {ECO:0000313|EMBL:AFD06411.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_biofilm_scaffold_48346_23
unknown

Not on your lists

comp(33254..34105)
DNA (852bp) protein (284aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_24
unknown

Not on your lists

comp(34113..34748)
DNA (636bp) protein (212aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_48346_25
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34872..36401)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MNB0_9SPHI
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:ADZ79294.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_biofilm_scaffold_48346_26
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36445..39501)
DNA (3057bp) protein (1019aa)
membrane protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B41733
Uncharacterized protein {ECO:0000313|EMBL:ETZ23330.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
TonB-dependent receptor plug
berkeley_reactor_200306_biofilm_scaffold_48346_27
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39552..40937)
DNA (1386bp) protein (462aa)
starch-binding protein n=1 Tax=Rudanella lutea RepID=UPI000363A775
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIM35712.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
berkeley_reactor_200306_biofilm_scaffold_48346_28
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(40965..43373)
DNA (2409bp) protein (803aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G6P6_ECHVK
SusC/RagA family TonB-linked outer membrane protein
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:AGA80505.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_biofilm_scaffold_48346_29
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43764..44675)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000375F40E
Uncharacterized protein {ECO:0000313|EMBL:CDX49705.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48346_30
unknown

Not on your lists

comp(44682..45233)
DNA (552bp) protein (184aa)
hypothetical protein
Displaying items 1-30 of 237 in total

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