name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_29408_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(156..560)
|
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Putative Holliday junction resolvase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI76_NIAKG
Holliday junction resolvase
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(575..994)
|
PilT protein domain protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CE13_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:GAO43185.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
twitching motility protein PilT
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria
|
Not on your lists |
comp(984..1223)
|
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CE12_SPHS2
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(1259..2179)
|
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000371472A
Putative 4-hydroxybenzoate octaprenyltransferase {ECO:0000313|EMBL:GAO43595.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
4-hydroxybenzoate octaprenyltransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(2176..2712)
|
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI78_NIAKG
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:AEW00695.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
2944..3504
|
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSI0_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64429.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_7
unknown
|
Not on your lists |
3501..3674
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_29408_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
3751..6372
|
DNA mismatch repair protein MutS n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI79_NIAKG
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
6609..7610
|
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036AFCB4
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAO45559.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
AraC family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
7854..8840
|
Transcriptional regulator, AraC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ5_NIAKG
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAO45559.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
AraC family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(8880..10334)
|
Gluconate kinase, FGGY family {ECO:0000313|EMBL:AEW00699.1}; EC=2.7.1.12 {ECO:0000313|EMBL:AEW00699.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Gluconate kinase, FGGY family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI82_NIAKG
gluconate kinase, FGGY family
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria
|
Not on your lists |
comp(10334..11461)
|
Cysteine desulfurase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI83_NIAKG
cysteine desulfurase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(11612..12991)
|
Phosphoglucosamine mutase {ECO:0000313|EMBL:AEW00701.1}; EC=5.4.2.10 {ECO:0000313|EMBL:AEW00701.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphoglucosamine mutase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI84_NIAKG
phosphoglucosamine mutase
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(13178..15196)
|
Sulfatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI86_NIAKG
sulfatase
Sulfatase {ECO:0000313|EMBL:AEW00703.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
15260..15886
|
Phosphoesterase PA-phosphatase related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI87_NIAKG
phosphoesterase PA-phosphatase-like protein
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:AEW00704.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
15879..17189
|
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI88_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00705.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(17186..17662)
|
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI89_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93376.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
17720..18421
|
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI90_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00707.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
18366..20708
|
Zn-dependent aminopeptidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI91_NIAKG
Zn-dependent aminopeptidase
Zn-dependent aminopeptidase {ECO:0000313|EMBL:AEW00708.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_20
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20764..21207)
|
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L4W0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KHD04168.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
clan AA aspartic protease, AF_0612 family
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(21320..21982)
|
MORN variant repeat protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI93_NIAKG
MORN variant repeat protein
MORN variant repeat protein {ECO:0000313|EMBL:AEW00710.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_22
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
22072..22815
|
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FVI3_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EIA07516.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(22913..23326)
|
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E30F2
3-dehydroquinate dehydratase
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(23326..24411)
|
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI96_NIAKG
carbamoyl-phosphate synthase small subunit
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(24490..24984)
|
50S ribosomal protein L17 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI97_NIAKG
50S ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(25141..26136)
|
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI98_NIAKG
DNA-directed RNA polymerase subunit alpha
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(26165..26770)
|
30S ribosomal protein S4 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI99_NIAKG
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(26921..27325)
|
30S ribosomal protein S11 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIA0_NIAKG
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(27525..27905)
|
30S ribosomal protein S13 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIA1_NIAKG
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_29408_30
unknown
|
Not on your lists |
27947..28150
|
This feature has no annotations |