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berkeley_reactor_200306_biofilm_scaffold_2368

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_2368_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..842)
DNA (840bp) protein (280aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEH6_NIAKG
integral membrane sensor hybrid histidine kinase
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:AEV99398.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2368_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

977..3700
DNA (2724bp) protein (908aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBL7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97127.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2368_3
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3825..7091
DNA (3267bp) protein (1089aa)
Glycoside hydrolase family 2 sugar binding n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYM6_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ETZ23905.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
family 2 glycoside hydrolase
berkeley_reactor_200306_biofilm_scaffold_2368_4
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7081..8040)
DNA (960bp) protein (320aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y1S5_9SPHI
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:EHQ24734.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
alcohol dehydrogenase zinc-binding domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_2368_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8105..8689)
DNA (585bp) protein (195aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNL3_CHIPD
Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACU64113.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_2368_6
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8699..9865)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000368BF76
FAD-binding monooxygenase
Monooxygenase, FAD-binding {ECO:0000313|EMBL:ABQ05848.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_biofilm_scaffold_2368_7
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9890..10639)
DNA (750bp) protein (250aa)
Helix-turn-helix, AraC domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IK55_FLUTR
AraC family transcriptional regulator
Helix-turn-helix, AraC domain protein {ECO:0000313|EMBL:AEA42954.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
berkeley_reactor_200306_biofilm_scaffold_2368_8
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10767..11159)
DNA (393bp) protein (131aa)
Putative endoribonuclease n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6U2_9SPHI
hypothetical protein
Endoribonuclease L-PSP {ECO:0000313|EMBL:AKD54058.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_biofilm_scaffold_2368_9
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11434..12726
DNA (1293bp) protein (431aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIL46559.1}; TaxID=1338011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis NUHP1.;"
berkeley_reactor_200306_biofilm_scaffold_2368_10
unknown

Not on your lists

12846..13208
DNA (363bp) protein (121aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2368_11
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13265..13834)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003818EA4
Crp/Fnr family transcriptional regulator
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:AIZ63951.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
berkeley_reactor_200306_biofilm_scaffold_2368_12
unknown

Not on your lists

14152..14658
DNA (507bp) protein (169aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2368_13
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15190..16254
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZ39_DYAFD
Replication factor C large subunit {ECO:0000313|EMBL:KHJ38323.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2368_trna_3
unknown

Not on your lists

comp(16770..16853)
DNA (84bp)
transferRNA Leu
berkeley_reactor_200306_biofilm_scaffold_2368_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17008..18156)
DNA (1149bp) protein (383aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7W9_NIAKG
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_2368_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18186..19256
DNA (1071bp) protein (357aa)
Glycosyl transferase family 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7X0_NIAKG
Glycosyl transferase family 2 {ECO:0000313|EMBL:KIC93119.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
family 2 glycosyl transferase
berkeley_reactor_200306_biofilm_scaffold_2368_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19310..19516
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7X1_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96909.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2368_trna_1
unknown

Not on your lists

19659..19731
DNA (73bp)
transferRNA Gly
berkeley_reactor_200306_biofilm_scaffold_2368_trna_2
unknown

Not on your lists

19802..19887
DNA (86bp)
transferRNA Leu
berkeley_reactor_200306_biofilm_scaffold_2368_17
unknown

Not on your lists

comp(19925..20524)
DNA (600bp) protein (200aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2368_18
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20541..21509
DNA (969bp) protein (323aa)
Terpene synthase metal-binding domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCR2_CHIPD
terpene synthase metal-binding domain-containing protein
Terpene synthase metal-binding domain protein {ECO:0000313|EMBL:ACU61411.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_2368_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21723..22754
DNA (1032bp) protein (344aa)
Transcriptional regulator, LacI family n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIK8_SPILD
LacI family transcription regulator
LacI family transcription regulator {ECO:0000313|EMBL:AHF14086.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_2368_20
RBG_13_Bacteroidetes_43_22_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22741..25275
DNA (2535bp) protein (845aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000370CDDA
hypothetical protein
Tax=RBG_13_Bacteroidetes_43_22_curated
berkeley_reactor_200306_biofilm_scaffold_2368_21
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25297..26460
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B64275
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE48513.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_biofilm_scaffold_2368_22
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26526..27770
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B5A66
Uncharacterized protein {ECO:0000313|EMBL:KIC95251.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2368_23
unknown

Not on your lists

27843..28625
DNA (783bp) protein (261aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_2368_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28632..29282)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F526B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03509.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2368_25
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29286..30128)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T824_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93112.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_2368_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30210..31430
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T910_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96963.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_2368_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31446..32222
DNA (777bp) protein (259aa)
MazG family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T911_NIAKG
MazG family protein
MazG family protein {ECO:0000313|EMBL:AEV96964.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 33 in total

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