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berkeley_reactor_200306_biofilm_scaffold_49244

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_49244_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(120..551)
DNA (432bp) protein (144aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBE7_NIAKG
LytTR family two component transcriptional regulator
Putative two-component response regulator {ECO:0000313|EMBL:GAO45623.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
berkeley_reactor_200306_biofilm_scaffold_49244_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(538..1605)
DNA (1068bp) protein (356aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBE6_NIAKG
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEW03446.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_49244_3
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1811..2209
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J0RQR0_9FLAO
Contig_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21708.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_49244_4
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2364..4172
DNA (1809bp) protein (603aa)
Glycoside hydrolase family 2 sugar binding protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CB65_SPHS2
glycoside hydrolase
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:ADZ80968.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_biofilm_scaffold_49244_5
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4225..4932)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RZU4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU19958.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
berkeley_reactor_200306_biofilm_scaffold_49244_6
Chryseobacterium antarcticum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5048..6589)
DNA (1542bp) protein (514aa)
DNA recombination protein RmuC n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PM44_ELIME
Recombinase RmuC {ECO:0000313|EMBL:KEY18629.1}; TaxID=266748 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium antarcticum.;"
DNA recombination protein RmuC
berkeley_reactor_200306_biofilm_scaffold_49244_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6609..7427)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035CD507
Uncharacterized protein {ECO:0000313|EMBL:EEI93872.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_49244_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8064..9716
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365AFA9
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AHF14189.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_49244_9

Not on your lists

9721..10386
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003677C74
Putative capsular synthesis response regulator transcription regulator protein {ECO:0000313|EMBL:EKD31763.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_49244_10
unknown

Not on your lists

comp(11047..11253)
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_49244_11
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11299..13710)
DNA (2412bp) protein (804aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5X5_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30397.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_49244_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13757..16207)
DNA (2451bp) protein (817aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CDL3_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KIC93637.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_49244_13
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16360..16860)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YIV4_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ27649.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_49244_14
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17450..19057)
DNA (1608bp) protein (536aa)
Putative alpha-glucosidase II n=1 Tax=Pedobacter sp. BAL39 RepID=A6EKH0_9SPHI
Putative alpha-glucosidase II {ECO:0000313|EMBL:EDM34024.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
putative alpha-glucosidase II
berkeley_reactor_200306_biofilm_scaffold_49244_15
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19207..19950
DNA (744bp) protein (248aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGC8_9SPHI
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHQ24480.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
3-oxoacyl-(acyl-carrier-protein) reductase
berkeley_reactor_200306_biofilm_scaffold_49244_16
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20001..20861
DNA (861bp) protein (287aa)
Transcriptional regulator, AraC family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGC9_9SPHI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EHQ24481.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_49244_17
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20850..21620)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IJY8_9BURK
short-chain dehydrogenase
Short-chain dehydrogenase {ECO:0000313|EMBL:AKD57156.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_biofilm_scaffold_49244_18
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21675..22103
DNA (429bp) protein (143aa)
Transcriptional regulator, MarR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUJ7_CHIPD
Contig38, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77345.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
MarR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_49244_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22116..23123
DNA (1008bp) protein (336aa)
Aminoglycoside phosphotransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUJ6_CHIPD
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ACU60994.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_49244_20
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(23125..23745)
DNA (621bp) protein (207aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U2M5_9CHLR
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:EFH80989.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
deaminase-reductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_49244_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23747..24538)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI000316A9B4
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEV97798.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_49244_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24550..24921)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUK5_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF16249.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_biofilm_scaffold_49244_23
unknown

Not on your lists

25023..25319
DNA (297bp) protein (99aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_49244_24
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25543..26109)
DNA (567bp) protein (189aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH77_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA93571.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_biofilm_scaffold_49244_25
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26238..27287
DNA (1050bp) protein (350aa)
anti-sigma factor n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3E2D2
anti-FecI sigma factor FecR
Putative anti-sigma factor {ECO:0000313|EMBL:EDM36933.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
berkeley_reactor_200306_biofilm_scaffold_49244_26
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27298..30603
DNA (3306bp) protein (1102aa)
TonB-dependent receptor n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YHD6_9SPHI
TonB-dependent receptor {ECO:0000313|EMBL:EHQ25470.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_49244_27
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30613..32088
DNA (1476bp) protein (492aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037DBD16
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
berkeley_reactor_200306_biofilm_scaffold_49244_28
unknown

Not on your lists

32090..32842
DNA (753bp) protein (251aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_49244_29
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32922..33791
DNA (870bp) protein (290aa)
short-chain dehydrogenase/reductase (EC:1.-.-.-)
Short-chain dehydrogenase/reductase n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L779_ZOBGA
Short-chain dehydrogenase {ECO:0000313|EMBL:KFF06645.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
berkeley_reactor_200306_biofilm_scaffold_49244_30
unknown

Not on your lists

33877..34359
DNA (483bp) protein (161aa)

This feature has no annotations

Displaying items 1-30 of 108 in total

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