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berkeley_reactor_200306_biofilm_scaffold_113606

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_113606_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(378..824)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRF7_CHIPD
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_113606_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(925..1191)
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=1 Tax=Segetibacter koreensis RepID=UPI00036C0A3F
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_3
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(1195..1548)
DNA (354bp) protein (118aa)
30S ribosomal protein S6 n=1 Tax=Niabella soli DSM 19437 RepID=H1NSD9_9SPHI
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
30S ribosomal protein S6
berkeley_reactor_200306_biofilm_scaffold_113606_4
unknown

Not on your lists

1588..1740
DNA (153bp) protein (51aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_113606_5
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1784..3097
DNA (1314bp) protein (438aa)
Heat shock protein Hsp90 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB12_NIAKG
Chaperone protein HtpG {ECO:0000313|EMBL:GAO45687.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Heat shock protein Hsp90
berkeley_reactor_200306_biofilm_scaffold_113606_6
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3128..3634
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000376A1F2
Molecular chaperone Hsp90 {ECO:0000313|EMBL:KIC89397.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Heat shock protein Hsp90
berkeley_reactor_200306_biofilm_scaffold_113606_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3631..5346)
DNA (1716bp) protein (572aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037EE6FC
Single-stranded DNA-specific exonuclease RecJ {ECO:0000313|EMBL:GAO45688.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
exonuclease RecJ
berkeley_reactor_200306_biofilm_scaffold_113606_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5362..6324)
DNA (963bp) protein (321aa)
Trans-hexaprenyltranstransferase {ECO:0000313|EMBL:AEW01353.1}; EC=2.5.1.30 {ECO:0000313|EMBL:AEW01353.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Trans-hexaprenyltranstransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB06_NIAKG
Trans-hexaprenyltranstransferase
berkeley_reactor_200306_biofilm_scaffold_113606_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6534..8201
DNA (1668bp) protein (556aa)
OmpA/MotB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB05_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91975.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
OmpA/MotB domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_113606_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8284..9099
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E7F35
Membrane protein {ECO:0000313|EMBL:KIC89393.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
outer membrane assembly lipoprotein YfiO
berkeley_reactor_200306_biofilm_scaffold_113606_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9074..9415
DNA (342bp) protein (114aa)
DNA-directed RNA polymerase, omega subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB03_NIAKG
DNA-directed RNA polymerase subunit omega
DNA-directed RNA polymerase, omega subunit {ECO:0000313|EMBL:AEW01350.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9467..10708
DNA (1242bp) protein (414aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase {ECO:0000313|EMBL:AEW01349.1}; EC=6.3.2.5 {ECO:0000313|EMBL:AEW01349.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB02_NIAKG
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase
berkeley_reactor_200306_biofilm_scaffold_113606_13
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10701..11624
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB01_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89390.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_113606_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11621..12316
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB00_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01347.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12358..13056
DNA (699bp) protein (233aa)
3-oxoacid CoA-transferase, A subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRC5_CHIPD
Succinyl-CoA:3-ketoacid-CoA transferase {ECO:0000313|EMBL:KIC89388.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
3-oxoacid CoA-transferase subunit A
berkeley_reactor_200306_biofilm_scaffold_113606_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13069..13725
DNA (657bp) protein (219aa)
3-oxoacid CoA-transferase, B subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRC4_CHIPD
Succinyl-CoA:3-ketoacid-CoA transferase {ECO:0000313|EMBL:KIC89386.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
3-oxoacid CoA-transferase subunit B
berkeley_reactor_200306_biofilm_scaffold_113606_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13720..14376)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01344.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14468..15118)
DNA (651bp) protein (217aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ6_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEW01343.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15174..16019)
DNA (846bp) protein (282aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ5_NIAKG
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEW01342.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16091..16753)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89383.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_113606_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16813..17199)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01340.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17981..18640
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ2_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEW01339.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_23
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18650..19321)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIP8_NIAKG
Putative two-component response regulator {ECO:0000313|EMBL:GAO45286.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
two component transcriptional regulator, LuxR family
berkeley_reactor_200306_biofilm_scaffold_113606_24
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19347..20129)
DNA (783bp) protein (261aa)
Histidine kinase n=1 Tax=Joostella marina DSM 19592 RepID=I3CA06_9FLAO
Histidine kinase {ECO:0000313|EMBL:EIJ40449.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
histidine kinase
berkeley_reactor_200306_biofilm_scaffold_113606_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20108..20797)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01341.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_26
unknown

Not on your lists

20945..21277
DNA (333bp) protein (111aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_113606_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21905..22576
DNA (672bp) protein (224aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9W7_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEW01311.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_113606_28
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22577..23401
DNA (825bp) protein (275aa)
Aminotransferase class IV n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRC3_CHIPD
class IV aminotransferase
Aminotransferase class IV {ECO:0000313|EMBL:ACU64362.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_113606_29
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23385..24698
DNA (1314bp) protein (438aa)
Deoxyribodipyrimidine photo-lyase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9W9_NIAKG
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KIC89303.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
deoxyribodipyrimidine photo-lyase
berkeley_reactor_200306_biofilm_scaffold_113606_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24711..25511)
DNA (801bp) protein (267aa)
1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996};; Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9X2_NIAKG
hypothetical protein
Displaying items 1-30 of 49 in total

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