ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_117554

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_117554_1
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41..238)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI000380F78F
Uncharacterized protein {ECO:0000313|EMBL:ERK73452.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
GTPase ObgE
berkeley_reactor_200306_biofilm_scaffold_117554_2
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

300..1454
DNA (1155bp) protein (385aa)
arsenic transporter n=1 Tax=Microbacteriaceae RepID=UPI0003743E4E
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
arsB; arsenical pump membrane protein
berkeley_reactor_200306_biofilm_scaffold_117554_3
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1465..3435)
DNA (1971bp) protein (657aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00036E1464
YhgE/Pip N-terminal domain protein {ECO:0000313|EMBL:EIC08459.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_117554_4
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3432..6380)
DNA (2949bp) protein (983aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003657737
drug exporters of the RND superfamily
Predicted drug exporters of the RND superfamily {ECO:0000313|EMBL:BAJ75304.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
berkeley_reactor_200306_biofilm_scaffold_117554_5
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6516..7178
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00036681A5
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERK69208.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_117554_6
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7230..8111
DNA (882bp) protein (294aa)
Secreted hydrolase n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P7K6_LEIXC
secreted hydrolase
Uncharacterized protein {ECO:0000313|EMBL:AGW41816.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
berkeley_reactor_200306_biofilm_scaffold_117554_7
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8023..8940)
DNA (918bp) protein (306aa)
AP endonuclease, family 2 n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T9W7_LEIAQ
AP endonuclease, family 2 {ECO:0000313|EMBL:ERK71492.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_117554_8
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9131..10609
DNA (1479bp) protein (493aa)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
trehalose-phosphate synthase n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000372B5BB
otsA; trehalose-6-phosphate synthase
berkeley_reactor_200306_biofilm_scaffold_117554_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10623..11435
DNA (813bp) protein (271aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Trehalose-phosphatase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2R8D6_LEIAQ
trehalose-phosphatase protein
berkeley_reactor_200306_biofilm_scaffold_117554_10
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11522..13216
DNA (1695bp) protein (565aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
dihydroxy-acid dehydratase n=1 Tax=Microbacteriaceae RepID=UPI00037FB368
dihydroxy-acid dehydratase
berkeley_reactor_200306_biofilm_scaffold_117554_11
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13272..15077
DNA (1806bp) protein (602aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Acetolactate synthase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T204_LEIAQ
acetolactate synthase 1 catalytic subunit
berkeley_reactor_200306_biofilm_scaffold_117554_12
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15080..15589
DNA (510bp) protein (170aa)
acetolactate synthase n=1 Tax=Microbacteriaceae RepID=UPI00037B6948
acetolactate synthase 3 regulatory subunit
Uncharacterized protein {ECO:0000313|EMBL:AGW41811.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
berkeley_reactor_200306_biofilm_scaffold_117554_13
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15664..16692
DNA (1029bp) protein (343aa)
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; EC=1.1.1.86 {ECO:0000255|HAMAP-Rule:MF_00435};; Acetohydroxy-acid isomeroreductase {ECO:0000255|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
ketol-acid reductoisomerase n=1 Tax=Microbacteriaceae RepID=UPI000368405D
berkeley_reactor_200306_biofilm_scaffold_117554_14
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16775..16963)
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QKQ3_ARTGO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB13404.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_117554_15
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17516..17788
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P8K5_LEIXC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW41809.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
berkeley_reactor_200306_biofilm_scaffold_117554_16
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17918..19510
DNA (1593bp) protein (531aa)
Phosphoglycerate dehydrogenase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2R6G7_LEIAQ
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ERK70835.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
serA; D-3-phosphoglycerate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_117554_17
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19620..19985
DNA (366bp) protein (122aa)
DGPF domain protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RPR8_LEIAQ
DGPF domain protein {ECO:0000313|EMBL:ERK70836.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_117554_18
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20021..21268
DNA (1248bp) protein (416aa)
RNA polymerase subunit sigma-24 n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B34195
Uncharacterized protein {ECO:0000313|EMBL:KHK97564.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
putative ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_biofilm_scaffold_117554_19
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21273..21857)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000362D3FA
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERK70932.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
transcriptional regulator, TetR family
berkeley_reactor_200306_biofilm_scaffold_117554_20
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21925..23466
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00037F53D2
Putative ATP synthase F0, A subunit {ECO:0000313|EMBL:ERK70933.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
major facilitator superfamily protein
berkeley_reactor_200306_biofilm_scaffold_117554_21
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23643..24698
DNA (1056bp) protein (352aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RQT0_LEIAQ
Putative 3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:ERK70934.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
berkeley_reactor_200306_biofilm_scaffold_117554_22
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24722..25852
DNA (1131bp) protein (377aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
branched-chain amino acid aminotransferase n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003816FBA
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:AAT89149.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
berkeley_reactor_200306_biofilm_scaffold_117554_23
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25950..27044)
DNA (1095bp) protein (365aa)
Uncharacterized protein (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RL48_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK69596.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
selenocysteine lyase
berkeley_reactor_200306_biofilm_scaffold_117554_24
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27103..28068
DNA (966bp) protein (322aa)
LysR family transcriptional regulator n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B56600
LysR family transcriptional regulator {ECO:0000313|EMBL:KFF59872.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_117554_25
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28089..28967
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00036BDA90
oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:AGW41865.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
berkeley_reactor_200306_biofilm_scaffold_117554_26
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28964..29731
DNA (768bp) protein (256aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Leifsonia sp. 109 RepID=UPI0003647D75
FAH family protein {ECO:0000313|EMBL:ERK70235.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxilase
berkeley_reactor_200306_biofilm_scaffold_117554_27
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29744..31273
DNA (1530bp) protein (510aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Glutamate--tRNA ligase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RNS7_LEIAQ
glutamyl-tRNA synthetase
berkeley_reactor_200306_biofilm_scaffold_117554_28
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31282..32220
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000362B410
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ERK70233.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
pyridine nucleotide-disulfide oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_117554_29
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32234..32680)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RK43_LEIAQ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERK69271.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
MarR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_117554_30
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32782..33861
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2R1W2_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK69270.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
Displaying items 1-30 of 54 in total

View Taxonomy