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berkeley_reactor_200306_biofilm_scaffold_6049

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_6049_1
unknown

Not on your lists

1..93
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6049_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

217..1194
DNA (978bp) protein (326aa)
VCBS repeat-containing protein n=2 Tax=Singulisphaera acidiphila RepID=L0DI63_SINAD
VCBS repeat-containing protein
VCBS repeat-containing protein {ECO:0000313|EMBL:AGA28932.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1228..2049)
DNA (822bp) protein (274aa)
Transposase n=2 Tax=Singulisphaera acidiphila RepID=L0DMU1_SINAD
transposase
Transposase {ECO:0000313|EMBL:AGA30158.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2063..2353)
DNA (291bp) protein (97aa)
Transposase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMS0_SINAD
transposase
Transposase {ECO:0000313|EMBL:AGA30138.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_5
Psychroflexus torquis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2414..6244)
DNA (3831bp) protein (1277aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI00036A8C75
protein with WD40 repeat domain
Protein with WD40 repeat domain {ECO:0000313|EMBL:AFU68173.1}; TaxID=313595 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus torquis (strain ATCC 700755 / ACAM 623).;"
berkeley_reactor_200306_biofilm_scaffold_6049_6
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6732..9254
DNA (2523bp) protein (841aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SR48_PLABD
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ADY61295.1}; Flags: Precursor;; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
berkeley_reactor_200306_biofilm_scaffold_6049_7
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9607..11337
DNA (1731bp) protein (577aa)
Peptidase M12A family protein (EC:3.4.24.21)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P7N0_9DELT
Astacin (Peptidase family M12A) {ECO:0000313|EMBL:EXG80361.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
berkeley_reactor_200306_biofilm_scaffold_6049_8
Arctogadus glacialis, Arctogadus, Gadiformes, Neopterygii, Chordata, Metazoa

Not on your lists

comp(11446..12159)
DNA (714bp) protein (238aa)
Antifreeze glycoprotein n=1 Tax=Arctogadus glacialis RepID=H2KMI7_ARCGL
Antifreeze glycoprotein {ECO:0000313|EMBL:AAQ09569.1}; TaxID=185735 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Arctogadus.;" source="Arctogadus glacialis (Arctic cod).;"
Major facilitator superfamily MFS_1
berkeley_reactor_200306_biofilm_scaffold_6049_9
Thermus sp. NMX2.A1, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(12305..14041)
DNA (1737bp) protein (579aa)
Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) RepID=A7TP17_VANPO
Uncharacterized protein {ECO:0000313|EMBL:ETN88259.1}; TaxID=570924 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. NMX2.A1.;"
peptidase C14, caspase catalytic subunit p20
berkeley_reactor_200306_biofilm_scaffold_6049_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14541..16145
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9R9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25987.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_11
Lachancea lanzarotensis, Lachancea, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

16771..17886
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) RepID=R7S1K5_PUNST
LALA0S15e00100g1_1 {ECO:0000313|EMBL:CEP64908.1}; TaxID=1245769 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea.;" source="Lachancea lanzarotensis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_6049_12
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18018..18833
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034667BF
WD repeat protein {ECO:0000313|EMBL:EMF57247.1}; TaxID=1054862 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
WD-40 repeat-containing protein
berkeley_reactor_200306_biofilm_scaffold_6049_13
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18830..22159
DNA (3330bp) protein (1110aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI00036A8C75
Uncharacterized protein {ECO:0000313|EMBL:KGE88112.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
protein with WD40 repeat domain
berkeley_reactor_200306_biofilm_scaffold_6049_14
unknown

Not on your lists

23351..23725
DNA (375bp) protein (125aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6049_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

24073..25284
DNA (1212bp) protein (404aa)
RND family efflux transporter, MFP subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQ56_SINAD
RND family efflux transporter MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGA30955.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25352..28576
DNA (3225bp) protein (1075aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNL2_SINAD
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:AGA30954.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
berkeley_reactor_200306_biofilm_scaffold_6049_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

29301..31079
DNA (1779bp) protein (593aa)
membrane protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A2526
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGA30958.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_18
unknown

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31605..32261
DNA (657bp) protein (219aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6049_trna_1
unknown

Not on your lists

comp(32497..32569)
DNA (73bp)
transferRNA Ala
berkeley_reactor_200306_biofilm_scaffold_6049_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32667..34484)
DNA (1818bp) protein (606aa)
Type IV secretory pathway, VirB10 component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK46_SINAD
type IV secretory pathway, VirB10 component
Type IV secretory pathway, VirB10 component {ECO:0000313|EMBL:AGA29215.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(34714..36249)
DNA (1536bp) protein (512aa)
L-fucose isomerase family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKL8_SINAD
L-fucose isomerase family protein
L-fucose isomerase family protein {ECO:0000313|EMBL:AGA29216.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_21
unknown

Not on your lists

36352..36747
DNA (396bp) protein (132aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_6049_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

36906..37277
DNA (372bp) protein (124aa)
NADH:ubiquinone oxidoreductase chain I-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIK0_SINAD
NADH:ubiquinone oxidoreductase chain I-like protein
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:AGA29219.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

37438..38889
DNA (1452bp) protein (484aa)
Cytochrome c peroxidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK53_SINAD
cytochrome c peroxidase
Cytochrome c peroxidase {ECO:0000313|EMBL:AGA29220.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

39121..42120
DNA (3000bp) protein (1000aa)
Bacterial membrane protein YfhO n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKM3_SINAD
Bacterial membrane protein YfhO {ECO:0000313|EMBL:AGA29221.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Bacterial membrane protein YfhO
berkeley_reactor_200306_biofilm_scaffold_6049_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

42137..43141
DNA (1005bp) protein (335aa)
Folate-binding protein YgfZ n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKP0_SINAD
folate-binding protein YgfZ
Folate-binding protein YgfZ {ECO:0000313|EMBL:AGA29236.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(43225..43488)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIZ6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29237.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(43747..44907)
DNA (1161bp) protein (387aa)
Putative dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK77_SINAD
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGA29238.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_6049_28
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45051..46007
DNA (957bp) protein (319aa)
O-acyltransferase n=1 Tax=Macrophomina phaseolina (strain MS6) RepID=K2SKC6_MACPH
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
berkeley_reactor_200306_biofilm_scaffold_6049_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

46124..46369
DNA (246bp) protein (82aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
CTP synthase n=2 Tax=Singulisphaera acidiphila RepID=L0DK83_SINAD
CTP synthase
Displaying items 1-30 of 47 in total

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