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berkeley_reactor_200306_biofilm_scaffold_17494

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_17494_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(3..1121)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRG8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31572.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_17494_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(1459..2970)
DNA (1512bp) protein (504aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRC1_SINAD
inosine-5''-monophosphate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_17494_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3391..5028
DNA (1638bp) protein (546aa)
polysaccharide biosynthesis protein n=1 Tax=Singulisphaera acidiphila RepID=UPI00036D21C7
membrane protein
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:AGA31574.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_17494_4
unknown

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5504..5737
DNA (234bp) protein (78aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_17494_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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5874..7781
DNA (1908bp) protein (636aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DM90_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA30499.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_17494_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(7801..8850)
DNA (1050bp) protein (350aa)
Type II secretion system protein G (GspG) n=2 Tax=Singulisphaera acidiphila RepID=L0DMK1_SINAD
type II secretion system protein G (GspG)
Type II secretion system protein G (GspG) {ECO:0000313|EMBL:AGA30482.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_17494_7
unknown

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9048..9413
DNA (366bp) protein (122aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_17494_8
Bacillus indicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9434..9817)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000302074B
Uncharacterized protein {ECO:0000313|EMBL:KEZ50523.1}; TaxID=1458122 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus indicus LMG 22858.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_17494_9
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10002..11267)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4X4V1_SALTO
Endo-1,3-1,4-beta-glycanase {ECO:0000313|EMBL:EIZ85788.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
Displaying 9 items

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