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berkeley_reactor_200306_biofilm_scaffold_10126

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_10126_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2..2251)
DNA (2250bp) protein (750aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJR4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29634.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2819..3916)
DNA (1098bp) protein (366aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLB0_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA29633.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_3
unknown

Not on your lists

comp(4052..4261)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10126_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4922..5527
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLT2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29631.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_5
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5466..6608)
DNA (1143bp) protein (381aa)
ABC transporter ATP-binding subunit, DevA type n=1 Tax=Rhodopirellula baltica SH28 RepID=K5D9E4_RHOBT
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
berkeley_reactor_200306_biofilm_scaffold_10126_6
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6658..7851)
DNA (1194bp) protein (398aa)
DevC protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJQ2_SINAD
DevC protein
Tax=RBG_16_Planctomycetes_64_10_curated
berkeley_reactor_200306_biofilm_scaffold_10126_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7888..9132)
DNA (1245bp) protein (415aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DI54_SINAD
antimicrobial peptide ABC transporter permease
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:AGA29074.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_8
Synechococcus sp. JA-3-3Ab, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9147..10322)
DNA (1176bp) protein (392aa)
Transporter, membrane fusion protein (MFP) family n=1 Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=Q2JTH2_SYNJA
membrane fusion protein family protein
Transporter, membrane fusion protein (MFP) family {ECO:0000313|EMBL:ABD00025.1}; TaxID=321327 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium; Yellowstone A-Prime).;"
berkeley_reactor_200306_biofilm_scaffold_10126_9
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10521..11573)
DNA (1053bp) protein (351aa)
Stage III sporulation protein E n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5UND3_9PLAN
Stage III sporulation protein E {ECO:0000313|EMBL:EMI57518.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
DNA segregation ATPase FtsK
berkeley_reactor_200306_biofilm_scaffold_10126_10
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12196..14202)
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029B062C
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:EMI57517.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
berkeley_reactor_200306_biofilm_scaffold_10126_11
unknown

Not on your lists

comp(14206..15126)
DNA (921bp) protein (307aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10126_12
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

15371..16210
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIW7_SINAD
hypothetical protein
Tax=CG_Arma_01
berkeley_reactor_200306_biofilm_scaffold_10126_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16265..17617)
DNA (1353bp) protein (451aa)
Putative dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ03_SINAD
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGA28825.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_14
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17801..19144
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XYH9_SORCE
Beta-glucosidase {ECO:0000313|EMBL:EYF01478.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10126_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19233..20177
DNA (945bp) protein (315aa)
Esterase/lipase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNP1_SINAD
esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:AGA30989.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20293..21804
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNV4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31054.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21905..22516
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRP5_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31056.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22536..25739)
DNA (3204bp) protein (1068aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D945_SINAD
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:AGA25370.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
berkeley_reactor_200306_biofilm_scaffold_10126_19
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25798..27168)
DNA (1371bp) protein (457aa)
RND family efflux transporter, MFP subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9S3_SINAD
RND family efflux transporter MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGA25371.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_20
unknown

Not on your lists

27430..27762
DNA (333bp) protein (111aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10126_21
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27902..28954
DNA (1053bp) protein (351aa)
ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
Ferrochelatase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R6A6_ISOPI
berkeley_reactor_200306_biofilm_scaffold_10126_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28995..30314)
DNA (1320bp) protein (440aa)
Stage II sporulation protein E (SpoIIE) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJP9_SINAD
Stage II sporulation protein E (SpoIIE)
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:AGA29063.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30573..31835
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPA6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31092.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(31921..32295)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG98_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27706.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

32525..32869
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI0002DF83DC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31099.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_26
Leishmania braziliensis, Leishmania, Kinetoplastida, Eukaryota

Not on your lists

comp(32938..33816)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Leishmania braziliensis RepID=A4HAW9_LEIBR
Contig, possible fusion of chromosomes 20 and 34 {ECO:0000313|EMBL:CAM38554.2}; TaxID=5660 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania braziliensis species complex.;" source="Leishmania braziliensis.;"
berkeley_reactor_200306_biofilm_scaffold_10126_27
unknown

Not on your lists

comp(33867..34235)
DNA (369bp) protein (123aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10126_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

34484..35689
DNA (1206bp) protein (402aa)
aminotransferase class V
Aminotransferase class V {ECO:0000313|EMBL:AHG91759.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Kynureninase id=4829916 bin=GWC2_Ignavibacteria_56_12 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
berkeley_reactor_200306_biofilm_scaffold_10126_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(35722..38571)
DNA (2850bp) protein (950aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DEB4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27592.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_10126_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(38715..39695)
DNA (981bp) protein (327aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG01_SINAD
multidrug ABC transporter ATPase
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:AGA27591.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 53 in total

View Taxonomy