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berkeley_reactor_200306_biofilm_scaffold_75379

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_75379_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(136..789)
DNA (654bp) protein (218aa)
Tetratricopeptide repeat protein n=2 Tax=Singulisphaera acidiphila RepID=L0DNA5_SINAD
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AGA30854.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_75379_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2332..3357
DNA (1026bp) protein (342aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCC0_9BACT
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:EEF62588.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_75379_3
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

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comp(4102..5307)
DNA (1206bp) protein (402aa)
family 5 glycosyl hydrolase (EC:3.2.1.-) id=18803 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
hypothetical protein
Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
berkeley_reactor_200306_biofilm_scaffold_75379_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6785..7207
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E003B3
cupin domain-containing protein
Cupin domain-containing protein {ECO:0000313|EMBL:AGA24677.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_75379_5
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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7234..8082
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003048D72
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABG05293.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
berkeley_reactor_200306_biofilm_scaffold_75379_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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8137..8886
DNA (750bp) protein (250aa)
LysR family transcriptional regulator n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C49
NmrA family protein {ECO:0000313|EMBL:EFH84027.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
nucleoside-diphosphate-sugar epimerase
berkeley_reactor_200306_biofilm_scaffold_75379_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9415..10413)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI00031028F2
biotin-(acetyl-CoA-carboxylase) ligase BirA
BirA, biotin-(Acetyl-CoA-carboxylase) ligase {ECO:0000313|EMBL:AGA30853.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_75379_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10410..11336)
DNA (927bp) protein (309aa)
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNL4_SINAD
nicotinate-nucleotide pyrophosphorylase
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:AGA30852.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_75379_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(11415..13487)
DNA (2073bp) protein (691aa)
UvrABC system protein B n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPU4_SINAD
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
excinuclease ABC subunit B
berkeley_reactor_200306_biofilm_scaffold_75379_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13551..13946)
DNA (396bp) protein (132aa)
General secretion pathway protein K n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNA0_SINAD
General secretion pathway protein K
General secretion pathway protein K {ECO:0000313|EMBL:AGA30849.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_biofilm_scaffold_75379_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14076..15053)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPS6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30848.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 11 items

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