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2019_SCN_bioreactor_200211_planktonic_Bacteria_48_334

In projects: 2019_SCN_bioreactor_200211_planktonic  |  SCN_92

Consensus taxonomy: Bacteria

Displaying 13 items
contig # features sequence size GC content (%) Cov Coding Density (%)
berkeley_reactor_200306_planktonic_scaffold_312699
Domain: Bacteria (63.4%)
1306 1505132 bp 47.82 334.67 92.44
berkeley_reactor_200306_planktonic_scaffold_72183
Domain: Bacteria (61.66%)
926 1104343 bp 48.21 335.03 90.38
berkeley_reactor_200306_planktonic_scaffold_31163
Domain: Bacteria (64.01%)
689 805040 bp 47.93 318.48 89.70
berkeley_reactor_200306_planktonic_scaffold_106348
Domain: Bacteria (59.74%)
626 707795 bp 48.21 337.71 91.19
berkeley_reactor_200306_planktonic_scaffold_86191
Domain: Bacteria (53.74%)
441 503752 bp 48.41 339.36 90.05
berkeley_reactor_200306_planktonic_scaffold_86991
Domain: Bacteria (58.2%)
256 293165 bp 49.06 341.26 88.69
berkeley_reactor_200306_planktonic_scaffold_32813
Domain: Bacteria (66.49%)
188 238396 bp 47.73 332.96 90.57
berkeley_reactor_200306_planktonic_scaffold_252181
Domain: Bacteria (69.74%)
152 178017 bp 47.99 335.05 92.79
berkeley_reactor_200306_planktonic_scaffold_175535
Domain: Bacteria (51.72%)
58 65707 bp 51.06 344.79 83.35
berkeley_reactor_200306_planktonic_scaffold_71541
Domain: Bacteria (50%)
6 5350 bp 47.29 332.10 16.45
berkeley_reactor_200306_planktonic_scaffold_310426
Order: Enterobacteriales (80%)
5 3246 bp 48.80 332.86 55.18
berkeley_reactor_200306_planktonic_scaffold_191623
Order: Enterobacteriales (100%)
5 3808 bp 45.96 336.59 53.26
berkeley_reactor_200306_planktonic_scaffold_172777
Phylum: Proteobacteria (50%)
4 7579 bp 47.51 345.54 91.28
Displaying 13 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.