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berkeley_reactor_200306_planktonic_scaffold_132334

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_132334_1
unknown

Not on your lists

3..131
DNA (129bp) protein (43aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_132334_2
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

comp(363..1391)
DNA (1029bp) protein (343aa)
alcohol dehydrogenase (EC:1.1.1.1)
alcohol dehydrogenase n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B516C3
Alcohol dehydrogenase {ECO:0000313|EMBL:BAL55536.1}; TaxID=236499 species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
berkeley_reactor_200306_planktonic_scaffold_132334_3
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1469..3484)
DNA (2016bp) protein (672aa)
cadmium-transporting ATPase (EC:3.6.3.3)
Heavy metal translocating P-type ATPase n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RVT8_9PLAN
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EMI18074.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
berkeley_reactor_200306_planktonic_scaffold_132334_4
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3488..5077)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3FF3
Uma3
Tax=GWB2_Deltaproteobacteria_55_19_curated
berkeley_reactor_200306_planktonic_scaffold_132334_5
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(5751..7175)
DNA (1425bp) protein (475aa)
Hydrogen dehydrogenase {ECO:0000313|EMBL:EHC15026.1}; EC=1.12.1.2 {ECO:0000313|EMBL:EHC15026.1};; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit (EC:1.12.1.2)
Hydrogen dehydrogenase n=1 Tax=Fischerella sp. JSC-11 RepID=G6FT40_9CYAN
berkeley_reactor_200306_planktonic_scaffold_132334_6
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(7255..7797)
DNA (543bp) protein (181aa)
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NF88_ROSCS
NADH ubiquinone oxidoreductase 20 kDa subunit
NADH ubiquinone oxidoreductase 20 kDa subunit {ECO:0000313|EMBL:ABU57463.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
berkeley_reactor_200306_planktonic_scaffold_132334_7
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(7785..8585)
DNA (801bp) protein (267aa)
Bidirectional hydrogenase complex protein HoxU n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IF09_9CHLR
Bidirectional hydrogenase complex protein HoxU {ECO:0000313|EMBL:EFO80213.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
bidirectional hydrogenase complex protein HoxU
berkeley_reactor_200306_planktonic_scaffold_132334_8
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(8709..11291)
DNA (2583bp) protein (861aa)
mgtA; magnesium-transporting ATPase, P-type (EC:3.6.3.2)
magnesium-translocating P-type ATPase id=14426023 bin=bin1_lowGC species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
berkeley_reactor_200306_planktonic_scaffold_132334_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11555..11968)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBW2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26345.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12131..13069)
DNA (939bp) protein (313aa)
UspA domain-containing protein id=14625467 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
universal stress protein
Tax=CSP1_6_Rokubacteria
berkeley_reactor_200306_planktonic_scaffold_132334_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13148..13981)
DNA (834bp) protein (278aa)
Universal stress protein UspA-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDC6_SINAD
universal stress protein UspA-like protein
Universal stress protein UspA-like protein {ECO:0000313|EMBL:AGA26838.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13975..14388)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBU6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26839.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14457..14705)
DNA (249bp) protein (83aa)
hypothetical protein id=14429138 bin=bin3_NC10 species=Thermoanaerobacterium saccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
berkeley_reactor_200306_planktonic_scaffold_132334_14
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14785..15288)
DNA (504bp) protein (168aa)
Universal stress protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QY55_PIRSD
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ADB16269.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_132334_15
unknown

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15520..15822
DNA (303bp) protein (101aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_132334_16
Rhodopirellula sp. SWK7, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15756..16193)
DNA (438bp) protein (146aa)
Putative secreted protein n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5TN40_9PLAN
Putative secreted protein {ECO:0000313|EMBL:EMI46986.1}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_132334_17
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16502..19198)
DNA (2697bp) protein (899aa)
Acylglycerophosphoethanolamine acyltransferase {ECO:0000313|EMBL:EAQ79233.1}; EC=6.2.1.20 {ECO:0000313|EMBL:EAQ79233.1};; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase n=1 Tax=Schlesneria paludicola RepID=UPI00029A36DD
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_132334_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(19402..20055)
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=Rhizobium fredii RepID=G9ADR0_RHIFH
transport-associated protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
berkeley_reactor_200306_planktonic_scaffold_132334_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(20155..20781)
DNA (627bp) protein (209aa)
Molecular chaperone (Small heat shock protein) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGI8_SINAD
Heat shock protein Hsp20 {ECO:0000313|EMBL:CDM66412.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
molecular chaperone
berkeley_reactor_200306_planktonic_scaffold_132334_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21384..21944)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGE9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27756.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22027..22296)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKH8_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29171.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22301..22861)
DNA (561bp) protein (187aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJZ8_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA29170.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23468..24361)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9G7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25301.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(24522..24728)
DNA (207bp) protein (69aa)
Carbon storage regulator CsrA n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDB1_SINAD
carbon storage regulator CsrA
Carbon storage regulator CsrA {ECO:0000313|EMBL:AGA26840.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(24763..25113)
DNA (351bp) protein (117aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDV4_SINAD
periplasmic or secreted lipoprotein
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:AGA26841.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_132334_26
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25578..26756
DNA (1179bp) protein (393aa)
Globin-coupled histidine kinase; EC=2.7.13.3;; AfGcHK; Heme-based oxygen-sensor histidine kinase; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
Globin-coupled histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=GCHK_ANADF
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_132334_27
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26762..27502
DNA (741bp) protein (247aa)
Response regulator receiver protein n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5UMM9_9PLAN
Response regulator receiver protein {ECO:0000313|EMBL:EMI57248.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
sporulation initiation phosphotransferase F
berkeley_reactor_200306_planktonic_scaffold_132334_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27509..29365
DNA (1857bp) protein (619aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBV5_SINAD
PAS domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_132334_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

29362..29952
DNA (591bp) protein (197aa)
Response regulator with putative antiterminator output domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDD4_SINAD
response regulator with antiterminator output domain
Response regulator with putative antiterminator output domain {ECO:0000313|EMBL:AGA26848.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying 29 items

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