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berkeley_reactor_200306_planktonic_scaffold_300115

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_300115_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(121..1134)
DNA (1014bp) protein (338aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEA4_SINAD
Sua5/YciO/YrdC/YwlC family protein
berkeley_reactor_200306_planktonic_scaffold_300115_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1160..2311)
DNA (1152bp) protein (384aa)
Deoxyhypusine synthase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCQ6_SINAD
deoxyhypusine synthase
Deoxyhypusine synthase {ECO:0000313|EMBL:AGA27159.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2346..2948)
DNA (603bp) protein (201aa)
Arginine decarboxylase, pyruvoyl-dependent n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE74_SINAD
arginine decarboxylase
Arginine decarboxylase, pyruvoyl-dependent {ECO:0000313|EMBL:AGA27160.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4034..4567
DNA (534bp) protein (178aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DER3_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27161.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4754..5812)
DNA (1059bp) protein (353aa)
Asparaginase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DD37_SINAD
asparaginase
Asparaginase {ECO:0000313|EMBL:AGA27162.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6346..7035
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DEB0_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27163.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7286..9394
DNA (2109bp) protein (703aa)
Endonuclease MutS2 {ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|SAAS:SAAS00084246};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Mismatch repair ATPase (MutS family) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCR1_SINAD
mismatch repair ATPase
berkeley_reactor_200306_planktonic_scaffold_300115_8
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9628..10095)
DNA (468bp) protein (156aa)
Uncharacterized protein {ECO:0000313|EMBL:EYE88582.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
berkeley_reactor_200306_planktonic_scaffold_300115_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10221..12464)
DNA (2244bp) protein (748aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE79_SINAD
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase
berkeley_reactor_200306_planktonic_scaffold_300115_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12821..13933)
DNA (1113bp) protein (371aa)
Metal-dependent hydrolase n=2 Tax=Singulisphaera acidiphila RepID=L0DER6_SINAD
metal-dependent hydrolase
Metal-dependent hydrolase {ECO:0000313|EMBL:AGA27166.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_11
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13959..15074)
DNA (1116bp) protein (372aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
nadA; quinolinate synthetase (EC:1.4.3.16)
Quinolinate synthase A n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5UHA9_9PLAN
berkeley_reactor_200306_planktonic_scaffold_300115_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15345..16445
DNA (1101bp) protein (367aa)
Signal transduction histidine kinase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DD43_SINAD
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:AGA27167.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16500..18554
DNA (2055bp) protein (685aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEB7_SINAD
PAS domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_300115_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18544..18996
DNA (453bp) protein (151aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCR5_SINAD
response regulator containing a CheY-like receiver domain and a GGDEF domain
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:AGA27169.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19055..19678)
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DE83_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27170.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20016..20360
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DD61_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27187.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20350..20775
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DED7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27188.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_18
unknown

Not on your lists

comp(20854..21144)
DNA (291bp) protein (97aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_300115_19
unknown

Not on your lists

comp(21141..21521)
DNA (381bp) protein (127aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_300115_20
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21807..22022
DNA (216bp) protein (72aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MJ9_MESSB
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ETR77540.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
berkeley_reactor_200306_planktonic_scaffold_300115_21
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22019..22648
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJD4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHD31914.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_300115_22
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22645..23613
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002FEA7B5
XRE family transcriptional regulator
Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:ACL05628.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
berkeley_reactor_200306_planktonic_scaffold_300115_23
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

23618..24250
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002DED089
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
berkeley_reactor_200306_planktonic_scaffold_300115_24
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24434..25645
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031080B1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJX00924.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
berkeley_reactor_200306_planktonic_scaffold_300115_25
RBG_16_Deltaproteobacteria_44_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25699..26172
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4QD65_PSECO
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_44_11_curated
berkeley_reactor_200306_planktonic_scaffold_300115_trna_1
unknown

Not on your lists

comp(26472..26544)
DNA (73bp)
transferRNA Glu
berkeley_reactor_200306_planktonic_scaffold_300115_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26681..27439
DNA (759bp) protein (253aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEU0_SINAD
alpha/beta hydrolase
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:AGA27196.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27537..27764
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DD70_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27197.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27766..29025
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEE5_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27198.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_300115_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

29334..30914
DNA (1581bp) protein (527aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
4-alpha-glucanotransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCU7_SINAD
4-alpha-glucanotransferase
Displaying items 1-30 of 89 in total

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