ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_332275

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_332275_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(177..1739)
DNA (1563bp) protein (521aa)
Fe-S oxidoreductase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DB33_SINAD
Fe-S oxidoreductase
Fe-S oxidoreductase {ECO:0000313|EMBL:AGA26070.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_2
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1981..2568
DNA (588bp) protein (196aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GXV8_9GAMM
hypothetical protein
Conserved protein of DIM6/NTAB family {ECO:0000313|EMBL:AGA91588.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
berkeley_reactor_200306_planktonic_scaffold_332275_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2723..4099
DNA (1377bp) protein (459aa)
Tryptophanase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9J4_SINAD
tryptophanase
Tryptophanase {ECO:0000313|EMBL:AGA26064.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4280..5950
DNA (1671bp) protein (557aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002ED8594
N-acyl-D-aspartate/D-glutamate deacylase
N-acyl-D-aspartate/D-glutamate deacylase {ECO:0000313|EMBL:AGA29800.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6043..7248)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DI53_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28922.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8315..9415
DNA (1101bp) protein (367aa)
Ni,Fe-hydrogenase I small subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIJ6_SINAD
Ni,Fe-hydrogenase I small subunit
Ni,Fe-hydrogenase I small subunit {ECO:0000313|EMBL:AGA28680.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_7
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9541..12657
DNA (3117bp) protein (1039aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI00037F51C8
PAS domain-containing protein
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_332275_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12675..13598)
DNA (924bp) protein (308aa)
Esterase/lipase n=2 Tax=Singulisphaera acidiphila RepID=L0DKG4_SINAD
esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:AGA29752.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_9
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13796..14911
DNA (1116bp) protein (372aa)
Peptidase M50 n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QZZ2_ISOPI
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:ADV64268.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_332275_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15149..18223
DNA (3075bp) protein (1025aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DD13_SINAD
Uncharacterized protein {ECO:0000313|EMBL:AGA26541.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_332275_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18228..19658
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCE4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26540.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_12
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(20338..21213)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IIN5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFO78941.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_332275_13
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(21240..22364)
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IIN5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFO78941.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
serine/threonine protein kinase
berkeley_reactor_200306_planktonic_scaffold_332275_14
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(22441..25320)
DNA (2880bp) protein (960aa)
Uncharacterized protein n=1 Tax=Nostoc sp. PCC 7107 RepID=K9QF92_9NOSO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY43472.1}; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
berkeley_reactor_200306_planktonic_scaffold_332275_15
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(25411..27876)
DNA (2466bp) protein (822aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D28EED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY66274.1}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
berkeley_reactor_200306_planktonic_scaffold_332275_16
unknown

Not on your lists

comp(28501..28659)
DNA (159bp) protein (53aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_332275_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28699..29853)
DNA (1155bp) protein (385aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBQ6_SINAD
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
berkeley_reactor_200306_planktonic_scaffold_332275_18
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

29997..30890
DNA (894bp) protein (298aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=2 Tax=Singulisphaera acidiphila RepID=L0DC90_SINAD
methylase
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AGA26286.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_19
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31024..31620
DNA (597bp) protein (199aa)
Isochorismatase hydrolase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R5S1_ISOPI
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ADV62828.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
berkeley_reactor_200306_planktonic_scaffold_332275_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31626..32444
DNA (819bp) protein (273aa)
HD domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAK1_SINAD
HD domain-containing protein
HD domain-containing protein {ECO:0000313|EMBL:AGA26287.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

32692..33402
DNA (711bp) protein (237aa)
Protein tyrosine/serine phosphatase n=2 Tax=Singulisphaera acidiphila RepID=L0DA84_SINAD
protein tyrosine/serine phosphatase
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:AGA26289.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(33432..34499)
DNA (1068bp) protein (356aa)
Putative dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBR0_SINAD
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGA26290.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_23
unknown

Not on your lists

comp(34895..35215)
DNA (321bp) protein (107aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_332275_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

35475..35972
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAK7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26292.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_332275_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(36523..38871)
DNA (2349bp) protein (783aa)
FG-GAP repeat protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBT0_SINAD
FG-GAP repeat protein {ECO:0000313|EMBL:AGA26293.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
FG-GAP repeat-containing protein
Displaying 25 items

View Taxonomy