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berkeley_reactor_200306_planktonic_scaffold_256481_18

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(21772..22350)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-70 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C63 similarity UNIREF
DB: UNIREF100
  • Identity: 68.0
  • Coverage: 175.0
  • Bit_score: 239
  • Evalue 2.40e-60
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48233.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.9
  • Coverage: 171.0
  • Bit_score: 155
  • Evalue 6.40e-35
RNA polymerase sigma-E factor similarity KEGG
DB: KEGG
  • Identity: 42.7
  • Coverage: 178.0
  • Bit_score: 143
  • Evalue 3.90e-32

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 579
GTGGGCGAGGACGAGGCGAAGACCTGGACCGCCGCCCCGTACGCGGATTACCTCCGCGTGCTTGCGCGGCTCCACGTCGGCCCCAACCTGCGCGGCAAGCTCGACCCGTCCGACGTGGTCCAGCAGGCGGTGCTCCGGGCTCACGAGAAGTCGGCGCAGTTCCGCGGGTCCACCGAGGCCGAATGGCTGGCATGGCTGAGGGCGATCCTCGGCAACGTCATCGCCGGCACCCGGCGCCGCTACGCGGCCGACGCGAGGGACCTCGGGCGCGAGCGGTCGCTCCAGGCGGGCCTGGACGAGTCGGCGTCGCGGATGGAGGGCTGGCTCGCGGCGGACCAGACCTCGCCGAGCCAGCGGGCCTCGAGGCACGAGCAGGCCCTGCGCCTGGCCGAGGCGCTGGCGAGGCTGCCGGCCGACCAGCGCGAGGCGGTCGAGTTGCACCACCTGCACGGGTTGACGGTCGCCGAGGTCGGCGAGCGCATGGGGCGGACGAGGGCGGCGGCGATGGGGCTCATCTTCCGCGGCCTCAAGGCGCTCCGGGGGTTGCTCGAGGACGCATCGGGGAGGGTCGAGCCATGA
PROTEIN sequence
Length: 193
VGEDEAKTWTAAPYADYLRVLARLHVGPNLRGKLDPSDVVQQAVLRAHEKSAQFRGSTEAEWLAWLRAILGNVIAGTRRRYAADARDLGRERSLQAGLDESASRMEGWLAADQTSPSQRASRHEQALRLAEALARLPADQREAVELHHLHGLTVAEVGERMGRTRAAAMGLIFRGLKALRGLLEDASGRVEP*