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berkeley_reactor_200306_planktonic_scaffold_256481

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Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_256481_1
unknown

Not on your lists

3..116
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_256481_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(368..2260)
DNA (1893bp) protein (631aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY34_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21182.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_256481_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2329..2742)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDA7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26818.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3713..4816)
DNA (1104bp) protein (368aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBS3_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA26819.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4958..6658)
DNA (1701bp) protein (567aa)
FecR protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQR2_SINAD
FecR protein
FecR protein {ECO:0000313|EMBL:AGA31300.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_6
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6655..7212)
DNA (558bp) protein (186aa)
RNA polymerase sigma factor n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPK3_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_7

Not on your lists

7727..8662
DNA (936bp) protein (312aa)
Esterase n=1 Tax=uncultured bacterium RepID=B5AU41_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKO05290.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
esterase
berkeley_reactor_200306_planktonic_scaffold_256481_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9012..10100
DNA (1089bp) protein (363aa)
Leucyl aminopeptidase (Aminopeptidase T) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DR43_SINAD
leucyl aminopeptidase
Leucyl aminopeptidase (Aminopeptidase T) {ECO:0000313|EMBL:AGA30861.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_9
CG_CP01_01, CG_CP01, Bacteria

Not on your lists

10164..10568
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BYE7_METCG
hypothetical protein
Tax=CG_CP01_01
berkeley_reactor_200306_planktonic_scaffold_256481_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10624..11913
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPW2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30860.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12043..13467)
DNA (1425bp) protein (475aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPT8_SINAD
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:AGA30845.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13576..15150)
DNA (1575bp) protein (525aa)
Trypsin-like serine protease with C-terminal PDZ domain n=2 Tax=Singulisphaera acidiphila RepID=L0DR10_SINAD
trypsin-like serine protease with C-terminal PDZ domain
Trypsin-like serine protease with C-terminal PDZ domain {ECO:0000313|EMBL:AGA30846.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_13
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15474..15773
DNA (300bp) protein (100aa)
phosphopantetheine-binding protein n=1 Tax=Schlesneria paludicola RepID=UPI00029B4DBB
putative acyl carrier protein
Putative acyl carrier protein {ECO:0000313|EMBL:BAJ31715.1}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
berkeley_reactor_200306_planktonic_scaffold_256481_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15929..17113)
DNA (1185bp) protein (395aa)
Multidrug resistance efflux pump n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDH7_SINAD
multidrug resistance efflux pump
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGA27312.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17146..17907)
DNA (762bp) protein (254aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DER7_SINAD
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AGA27313.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17960..19162)
DNA (1203bp) protein (401aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DD74_SINAD
antimicrobial peptide ABC transporter permease
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:AGA27314.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_17
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(19436..21775)
DNA (2340bp) protein (780aa)
serine/threonine protein kinase n=1 Tax=Schlesneria paludicola RepID=UPI000299ED77
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ADB18112.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_256481_18

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comp(21772..22350)
DNA (579bp) protein (193aa)
RNA polymerase subunit sigma-70 n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C63
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48233.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RNA polymerase sigma-E factor
berkeley_reactor_200306_planktonic_scaffold_256481_19
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(22568..25249)
DNA (2682bp) protein (894aa)
phosphoesterase n=1 Tax=Schlesneria paludicola RepID=UPI00029A1F48
Phosphoesterase family protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_256481_20
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(25350..25739)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B5AB52
Predicted membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
berkeley_reactor_200306_planktonic_scaffold_256481_21
RLO_PLX_64_10, Bacteria

Not on your lists

comp(25801..27039)
DNA (1239bp) protein (413aa)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C38FD
8-amino-7-oxononanoate synthase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_256481_22
unknown

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27345..28190
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A96A4
berkeley_reactor_200306_planktonic_scaffold_256481_23
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28190..29401
DNA (1212bp) protein (404aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; Flags: Precursor;; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
3-oxoacyl-(acyl-carrier-protein) synthase II n=1 Tax=Schlesneria paludicola RepID=UPI00029A3EBD
berkeley_reactor_200306_planktonic_scaffold_256481_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

29592..30377
DNA (786bp) protein (262aa)
oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C474A
Uncharacterized protein {ECO:0000313|EMBL:CDM66186.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short chain dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_256481_25
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

30383..31510
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYQ8_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EES52343.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;"
efflux ABC transporter inner membrane protein
berkeley_reactor_200306_planktonic_scaffold_256481_26
Leptospirillum sp. Group IV, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

31546..32226
DNA (681bp) protein (227aa)
ABC transporter related protein n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0XVL7_9BACT
ABC transporter related protein {ECO:0000313|EMBL:EQD23882.1}; TaxID=1260983 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group IV 'UBA BS'.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_256481_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

32231..33175
DNA (945bp) protein (315aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYR0_9BACT
secretion protein HlyD family protein
Tax=RBG_16_Acidobacteria_70_10_curated
berkeley_reactor_200306_planktonic_scaffold_256481_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

33458..34117
DNA (660bp) protein (220aa)
Putative phosphoribosyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFP5_SINAD
phosphoribosyltransferase
Putative phosphoribosyltransferase {ECO:0000313|EMBL:AGA28082.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

34194..34880
DNA (687bp) protein (229aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGY8_SINAD
dienelactone hydrolase-like enzyme
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:AGA28083.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_30
unknown

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35059..35529
DNA (471bp) protein (157aa)

This feature has no annotations

Displaying items 1-30 of 71 in total

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