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berkeley_reactor_200306_planktonic_scaffold_339394_21

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(19989..21050)

Top 3 Functional Annotations

Value Algorithm Source
Pectate lyase n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SWJ8_PLAL2 similarity UNIREF
DB: UNIREF100
  • Identity: 61.5
  • Coverage: 335.0
  • Bit_score: 446
  • Evalue 2.40e-122
pectate lyase similarity KEGG
DB: KEGG
  • Identity: 61.5
  • Coverage: 335.0
  • Bit_score: 446
  • Evalue 6.70e-123
Pectate lyase {ECO:0000313|EMBL:ADG69591.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.5
  • Coverage: 335.0
  • Bit_score: 446
  • Evalue 3.30e-122

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Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1062
ATGCGGCTCAAACGATGGGTGAGGTGGTGGATCCTCACCGGACTCCTCGTCGAGGCTTCGGCGGCGGAAGGGCCACGCAAGTATCTCGACCGACCGGACGGATGGTTCGCGACCGATGAGGCCCGACGCGTCGCGGCCAACGTCCTGTCGCACCAGTCGGATCTCGGCGGCTGGCCCAAGAACCTCGACACGACGGCAGCCCCTTACGCCGGCGACCGCAAGGCGCTCAAGCCGACCTTCGACAACGGCGCGACGACGGAGGAGCTGCGATTCCTGGCGAGCCTCGTCCGGGCCTCGAAGGACGAGCATGCCGAGGAGGCGTTCGACCGGGGGCTCGACTACATCCTCAAGGCCCAGTACCCCGGCGGCGGCTGGCCCCAGTTCGCCCCGCCCGGGCGGGCCTACCACCGCCACGTCACCTTCAACGACGGGGCGATGGTCCGCCTGCTGGAGTTCCTCCGCGAAGTCTCCGACGCGCCGACCTACGACTTCGTGGCCCGTTCGAAACGCGAGGCCGCTCGCGCCGCGTTCGCGAAGGGCGTCGCGTGCATCCTCCGGTGCCAGGTCCGCGTCGAGGGCCGTCGGACGGCCTGGTGTGCCCAGCACGACGAGGTGGACGATCGGCCCCGGCCGGGCCGGAGCTTCGAGCTCGCCAGCCTCAGCGGCTCGGAGTCGGTCGGGATCGTGCGGCTCCTGATGAGCCTCAAAGACCCGAGCCCCGAGGTCGTGGACGCGGTCGATTCGGCGGTCGCCTGGTTCGACGCCGTCAAGCTCGTCGGCATCCGGCAGGTCGAACGGCCCGACCCGAATTCACCGACCGGTATGGACAAGGTCGTCGTCGACGACCCCTCGGCCCCGCCCCTTTGGGCCCGCTTCTACGAGATCGGCACCAACCGGCCGCTCTTCGCCGATCGCGACGGCGTCCCCAAGTCTCGCCTGGCCGATATCGGCTACGAACGGCGCAACGGCTACGCCTGGCTCGTCTCCTCGCCTCAAAGCCTCCTGGAGCACGATTATCCGGCCTGGAAACGGGCACGAACGGGGAAGGCCGGAGGCCGTTGA
PROTEIN sequence
Length: 354
MRLKRWVRWWILTGLLVEASAAEGPRKYLDRPDGWFATDEARRVAANVLSHQSDLGGWPKNLDTTAAPYAGDRKALKPTFDNGATTEELRFLASLVRASKDEHAEEAFDRGLDYILKAQYPGGGWPQFAPPGRAYHRHVTFNDGAMVRLLEFLREVSDAPTYDFVARSKREAARAAFAKGVACILRCQVRVEGRRTAWCAQHDEVDDRPRPGRSFELASLSGSESVGIVRLLMSLKDPSPEVVDAVDSAVAWFDAVKLVGIRQVERPDPNSPTGMDKVVVDDPSAPPLWARFYEIGTNRPLFADRDGVPKSRLADIGYERRNGYAWLVSSPQSLLEHDYPAWKRARTGKAGGR*