ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_339394

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_339394_1
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(123..1355)
DNA (1233bp) protein (411aa)
Type II secretion system protein E n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QYH0_PIRSD
type II secretion system protein E
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_339394_2
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1352..1708)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQM4_9PLAN
anti-sigma-factor antagonist
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_339394_3
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2359..4329
DNA (1971bp) protein (657aa)
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:CDS54281.1}; EC=2.1.1.80 {ECO:0000313|EMBL:CDS54281.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFS3_SINAD
PAS domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_339394_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4358..5419)
DNA (1062bp) protein (354aa)
ADP-ribosylglycohydrolase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHA5_SINAD
ADP-ribosylglycohydrolase
ADP-ribosylglycohydrolase {ECO:0000313|EMBL:AGA28754.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(5475..5822)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D793_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24703.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_6
bacterium UASB14, Bacteria

Not on your lists

6164..6703
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEE8_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:GAK51835.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_339394_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7051..8823)
DNA (1773bp) protein (591aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPR4_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA30676.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_8
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8952..9302)
DNA (351bp) protein (117aa)
pectin degradation protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A44FC
Possible pectin degradation protein {ECO:0000313|EMBL:EDL61247.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
cupin
berkeley_reactor_200306_planktonic_scaffold_339394_9
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9660..10184)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002FB5567
acetyltransferase, ribosomal protein N-acetylase
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AFZ17996.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
berkeley_reactor_200306_planktonic_scaffold_339394_10

Not on your lists

comp(10279..11208)
DNA (930bp) protein (310aa)
Putative sirtuin-type regulators for CoA ligase (Histone deacetylase superfamily) n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FBA8_DESAA
Uncharacterized protein {ECO:0000313|EMBL:KKL26199.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
histone deacetylase superfamily protein
berkeley_reactor_200306_planktonic_scaffold_339394_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11600..12109
DNA (510bp) protein (170aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKR7_SINAD
carbonic anhydrase/acetyltransferase
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:AGA29852.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12238..12588
DNA (351bp) protein (117aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D538_SINAD
anti-anti-sigma regulatory factor
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:AGA24554.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_13
unknown

Not on your lists

12652..13059
DNA (408bp) protein (136aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_339394_14
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13820..14257
DNA (438bp) protein (146aa)
Putative transcriptional regulator n=2 Tax=Singulisphaera acidiphila RepID=L0DFU3_SINAD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA27725.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14872..15357
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DL76_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30149.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15365..15970
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI00038105E4
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGA29857.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_17

Not on your lists

comp(15985..16836)
DNA (852bp) protein (284aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL26952.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NAD(P)H azoreductase id=3354397 bin=GWA2_Elusimicrobia_66_18 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
NAD(P)H azoreductase
berkeley_reactor_200306_planktonic_scaffold_339394_18
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

16976..17323
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI0003480B1B
Uncharacterized protein {ECO:0000313|EMBL:KIJ73485.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
cinnamoyl ester hydrolase
berkeley_reactor_200306_planktonic_scaffold_339394_19
Brevibacillus sp. BC25, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17903..18958)
DNA (1056bp) protein (352aa)
Putative esterase of the alpha-beta hydrolase superfamily n=1 Tax=Brevibacillus sp. BC25 RepID=J2GNL1_9BACL
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:EJL24328.1}; TaxID=1144308 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. BC25.;"
patatin-like phospholipase family protein
berkeley_reactor_200306_planktonic_scaffold_339394_20
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19306..20037
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000365FCC9
phosphatase
Predicted phosphatase {ECO:0000313|EMBL:ABC28801.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
berkeley_reactor_200306_planktonic_scaffold_339394_21
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19989..21050)
DNA (1062bp) protein (354aa)
Pectate lyase n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SWJ8_PLAL2
pectate lyase
Pectate lyase {ECO:0000313|EMBL:ADG69591.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
berkeley_reactor_200306_planktonic_scaffold_339394_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21140..21943)
DNA (804bp) protein (268aa)
hydrolase n=1 Tax=Singulisphaera acidiphila RepID=UPI0003797EAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31356.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_23
unknown

Not on your lists

22417..22797
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DFR8_SINAD
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_339394_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(22938..25229)
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRK1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31625.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25368..27569)
DNA (2202bp) protein (734aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DE92_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27699.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_26

Not on your lists

comp(27717..28682)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031BB8DD
Marine sediment metagenome DNA, contig: S06H3_L01826 {ECO:0000313|EMBL:GAI09703.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
acetamidase/formamidase family protein
berkeley_reactor_200306_planktonic_scaffold_339394_27
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

28928..29821
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFV2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27698.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_28
unknown

Not on your lists

29863..30204
DNA (342bp) protein (114aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_339394_29
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30344..31126
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEL2_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27697.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_339394_30
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(31136..31723)
DNA (588bp) protein (196aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
2'-5' RNA ligase n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SFQ1_PLABD
2'-5' RNA ligase
Displaying items 1-30 of 35 in total

View Taxonomy