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berkeley_reactor_200306_planktonic_scaffold_68971

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_68971_1
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(1..1026)
DNA (1026bp) protein (342aa)
Ribulose-bisphosphate carboxylase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y121_PEDHD
ribulose 1,5-bisphosphate carboxylase
Ribulose 1,5-bisphosphate carboxylase {ECO:0000313|EMBL:AKC81858.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_68971_2
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(1034..1921)
DNA (888bp) protein (296aa)
Serine/threonine protein kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7E8_9BACT
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_68971_3
Prevotella sp. CAG:1058, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2038..5820
DNA (3783bp) protein (1261aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1262918 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1058.;"
Glycoside hydrolase family 2 candidate beta-galactosidase n=1 Tax=Prevotella sp. CAG:1058 RepID=R5CQ59_9BACT
beta-galactosidase
berkeley_reactor_200306_planktonic_scaffold_68971_4
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

6081..7307
DNA (1227bp) protein (409aa)
Polygalacturonase id=4315862 bin=GWF2_Planctomycete_41_51 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_68971_5
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

7334..8668
DNA (1335bp) protein (445aa)
Polygalacturonase id=4315862 bin=GWF2_Planctomycete_41_51 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
glycoside hydrolase family 28
Tax=RBG_13_Planctomycetes_46_10_curated
berkeley_reactor_200306_planktonic_scaffold_68971_6
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8705..12286
DNA (3582bp) protein (1194aa)
ricin B lectin n=1 Tax=Cohnella laeviribosi RepID=UPI0003709377
Ricin B lectin {ECO:0000313|EMBL:KGP83596.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
Ricin B lectin
berkeley_reactor_200306_planktonic_scaffold_68971_7
unknown

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12430..13245
DNA (816bp) protein (272aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_68971_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13407..14801
DNA (1395bp) protein (465aa)
Glycoside hydrolase family 28 n=2 Tax=Rhodothermus marinus RepID=D0MEP1_RHOM4
Endopolygalacturonase {ECO:0000313|EMBL:CDM64039.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glycoside hydrolase
berkeley_reactor_200306_planktonic_scaffold_68971_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14835..17924
DNA (3090bp) protein (1030aa)
Polygalacturonase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSA7_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF18012.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_68971_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(17930..19687)
DNA (1758bp) protein (586aa)
pectinesterase (EC:3.1.1.11)
Pectinesterase {ECO:0000313|EMBL:ACB77546.1}; EC=3.1.1.11 {ECO:0000313|EMBL:ACB77546.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Pectinesterase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP19_OPITP
berkeley_reactor_200306_planktonic_scaffold_68971_11
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19732..20913)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Coraliomargarita sp. CAG:312 RepID=R7LCW2_9BACT
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_68971_12
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20901..22163)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G0G4_ECHVK
Uncharacterized protein {ECO:0000313|EMBL:KJD31926.1}; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_68971_13
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(22160..24481)
DNA (2322bp) protein (774aa)
Glycoside hydrolase family 95 n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5U4R7_9PLAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC84161.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_68971_14
unknown

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24945..25433
DNA (489bp) protein (163aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_68971_15

Not on your lists

comp(25573..26946)
DNA (1374bp) protein (458aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WWM0_ACISM
berkeley_reactor_200306_planktonic_scaffold_68971_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(27073..27975)
DNA (903bp) protein (301aa)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:EDY16948.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EDY16948.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Fructose-bisphosphate aldolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9I7_9BACT
fda; fructose-bisphosphate aldolase
berkeley_reactor_200306_planktonic_scaffold_68971_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28094..28270
DNA (177bp) protein (59aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
berkeley_reactor_200306_planktonic_scaffold_68971_18
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28386..28997)
DNA (612bp) protein (204aa)
phosphoglycerate mutase n=1 Tax=Schlesneria paludicola RepID=UPI00029A7F57
Phosphoglycerate mutase {ECO:0000313|EMBL:GAN33032.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
phosphoglycerate mutase
berkeley_reactor_200306_planktonic_scaffold_68971_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29953..30543
DNA (591bp) protein (197aa)
Polysaccharide export protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD52_9BACT
Polysaccharide export protein {ECO:0000313|EMBL:EEF62398.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
polysaccharide export protein
berkeley_reactor_200306_planktonic_scaffold_68971_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30540..30680)
DNA (141bp) protein (47aa)
IS4 family transposase n=2 Tax=Proteobacteria RepID=K6CS20_PSEST
transposase, IS4 family
Uncharacterized protein {ECO:0000313|EMBL:EPD38756.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
Displaying 20 items

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