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berkeley_reactor_200306_planktonic_scaffold_12886_17

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(20635..22941)

Top 3 Functional Annotations

Value Algorithm Source
Type II and III secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM19_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 48.4
  • Coverage: 719.0
  • Bit_score: 577
  • Evalue 1.90e-161
Type II and III secretion system protein {ECO:0000313|EMBL:EEF59147.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.4
  • Coverage: 719.0
  • Bit_score: 577
  • Evalue 2.70e-161
gspD; general secretion pathway protein D, GspD similarity KEGG
DB: KEGG
  • Identity: 27.9
  • Coverage: 627.0
  • Bit_score: 224
  • Evalue 5.30e-56

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2307
ATGAAAACCATTCTTCTCGCATCCTTTTTGGCCCTTTCGGGCTTCGGCGCCCGGGCGCAATCCGCTCCCGGCACGCCGGACGTTCCTCCGCCCGGGCGCGTGCCCCGCTTTGGCAACAATGGACCGGTCACCCCGCCGCGCTATCCGCAGGCCGACGCCGCCAAGCAGGCGGAGGCCCAGGCCGAACCGCCCAAGTCCAAGGAACCCGAGGAAATGATTCCGGCGGGCACCATCAATTTCCAGGGCGTGGACGTGGATCAGGTGCTGGATGTGTATGCCAAGCTGGTGGGCCGGACGCTGCTGCGGTCCACCCTGCCCAATGCGAAAATCGTTTTGAAAACGGAAACACCGCTGACCAAGACCGAAGCGATTGAAGCCTTGCAGGCGGTGCTCGCGCTCAACGGCATTTCCGTCGTCAACATCGGGGACAAATTCGTGAAGGTCGGGCCGGTGGATCAAGCCAACACCTTCGGCGCGCAGTTCAGCAACACCAGCGTTACCAACCTGCCGGACCTGGGCTCCTACATCACGCGCATCGTGCAATTGAAATATGTCAAACCCAGTGAAATGGTGCCCATCATCCAGCCGTTCGCCAAGCTGGCCAATTCCATCCTGCCGATTGACAGCAACGGCATTTTGGTATTGCGCGACAACGCGGAAAACGTGAAGCGCATGATGGAGATGATTCAAAAAATTGACGTCAGCACGCCTTCGGAATTCATTTCGGAAGTCATTCCGATCCGTTACGCCGAGGCGGCGGACATCGCCAATGCGTTGAACAGTCTGGGCAGTGGCGGCGGGTCCACAGTGACGTTTGGTTCCAGCGGCGGACGATCCAGCATCAACGGATTGCGTGGCGGCATGACCGGTTCCAGCGGTTTTAACCAGGGCGGTTATCGCTCGACCTCGGGCTTTGGCGGCCAGACGGGCATGATGCCGCAATCAGATTCGATAACGCCCATGGCGATTGGGAGCAACGGCGCGCCCACTGGCGGCACCACCTTCCAGCAACGTTTGCAGTCTATCATCAACCGGGCTTCCGGCCCCAAGAGTGGCGGGGGTTCCGGCGAGGACCAAATCCAGGTGTTTGGCCAGACCAAGATCATTGCCGACGAGCGCAGCAATTCCCTGCTCATCTTTGCCACCCGCCAGGACATGGAAAACATCAAGCACGTCGTCAGCCAGTTGGACGTGCTGCTGGCGCAGGTGCTGATCGAGTCCATCATCATGGATGTGAACCTGGGGGACAGCGTGAACACCGGCGTTTCCGTGGTCCAGCAGCCCAAACAATACAACAACTCGAATGTCACCGGCGGCGGCGCGATGTTGAATGGTCCGCAATCCTTTCTGGGCACACTCCAAAGCCTGGCCACCAACGGTTTGGCCGGCTCCAGTTTGCCCACCAACGCCCTGTCGAGCGGATTGAGTTATTTCGGCAACATCGGGGATACTTGGAACATCGCGGTCCAGGCCGCCGCGTCGGATAACAACGCCAACATCATCCAGCGCCCGCGCATCCAGACTTCGCAGGCCAAGCCCGCCCAGTTTTTTGTGGGCGAAACGGTTCCCTACGTGACCAGCACTTACAACAATGCCTACAACGGCGGGTATGGCGGTTCCTCCTATTCACAGTTGTCCGTGGGGGTGGAACTGGATGTGACGCCGTTCATCAACCCCGAAGGATTGGTGGTCATGGACATCCAGCAGGAAATTGACGAAATCAGCGGCTACACCACCATTGACGGCAACCAGGTGCCCAACACGGTCAAACGCACTTTGAGCAGCGAGATCGCGGTCAACAACCGCGACACCGTCATTCTGGGCGGCTTTGTCAAGTCCGACAAAAGCCAGTCCCGGTCCGGGGTGCCGTTGCTGATGGACATTCCGCTGCTCGGACGGCTCTTCAGTTCCCACAGCGATTCCAAGGGCCGCTCGGAATTGATCGTGCTGATGCGCCCCACGGTTTTAAAGACGCCGGAGATCGCCGCCGCCCAGACCATCAAGGAAGCCCAGCGGCTGCCGGGCGTTTCTGCCGCCGCGGCGGCGGATGCCGCTTATGAACGGGAATTGATTGATGCCGAGCGCAAGAAGGAGCTGAAAAACGCCAAGGCCGGCAAACCGGCGGACGGCTTCTTCAACATGAAAACGAGCGGCGGAACCGACGACGCCAACTTTGGCGCCGCCGAAGAAAGCTCCGCCGGCAGGTCCCCGGGCACCAACCGCGTTTCCAGCCAGGCCACGCCGGAAAATCAGGAAAAGGCGCGCGCCGCGTTGGAGCAGGAAATGAACAACCCGTCAACGCCGTGA
PROTEIN sequence
Length: 769
MKTILLASFLALSGFGARAQSAPGTPDVPPPGRVPRFGNNGPVTPPRYPQADAAKQAEAQAEPPKSKEPEEMIPAGTINFQGVDVDQVLDVYAKLVGRTLLRSTLPNAKIVLKTETPLTKTEAIEALQAVLALNGISVVNIGDKFVKVGPVDQANTFGAQFSNTSVTNLPDLGSYITRIVQLKYVKPSEMVPIIQPFAKLANSILPIDSNGILVLRDNAENVKRMMEMIQKIDVSTPSEFISEVIPIRYAEAADIANALNSLGSGGGSTVTFGSSGGRSSINGLRGGMTGSSGFNQGGYRSTSGFGGQTGMMPQSDSITPMAIGSNGAPTGGTTFQQRLQSIINRASGPKSGGGSGEDQIQVFGQTKIIADERSNSLLIFATRQDMENIKHVVSQLDVLLAQVLIESIIMDVNLGDSVNTGVSVVQQPKQYNNSNVTGGGAMLNGPQSFLGTLQSLATNGLAGSSLPTNALSSGLSYFGNIGDTWNIAVQAAASDNNANIIQRPRIQTSQAKPAQFFVGETVPYVTSTYNNAYNGGYGGSSYSQLSVGVELDVTPFINPEGLVVMDIQQEIDEISGYTTIDGNQVPNTVKRTLSSEIAVNNRDTVILGGFVKSDKSQSRSGVPLLMDIPLLGRLFSSHSDSKGRSELIVLMRPTVLKTPEIAAAQTIKEAQRLPGVSAAAAADAAYERELIDAERKKELKNAKAGKPADGFFNMKTSGGTDDANFGAAEESSAGRSPGTNRVSSQATPENQEKARAALEQEMNNPSTP*