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berkeley_reactor_200306_planktonic_scaffold_12886

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_12886_1
unknown

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comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_12886_2
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(78..1484)
DNA (1407bp) protein (469aa)
KAP P-loop domain protein n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AHJ3_PSEF1
KAP P-loop domain-containing protein
KAP P-loop domain protein {ECO:0000313|EMBL:AEF20459.1}; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
berkeley_reactor_200306_planktonic_scaffold_12886_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1706..2518)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58233.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_12886_4
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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3000..3233
DNA (234bp) protein (78aa)
Putative addiction module component n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ART4_9BACT
Putative addiction module component {ECO:0000313|EMBL:EIP97725.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
addiction module antitoxin RelB
berkeley_reactor_200306_planktonic_scaffold_12886_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3593..4738
DNA (1146bp) protein (382aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDJ1_9BACT
berkeley_reactor_200306_planktonic_scaffold_12886_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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4842..6644
DNA (1803bp) protein (601aa)
Glycyl-tRNA synthetase {ECO:0000313|EMBL:EDY19203.1}; EC=6.1.1.14 {ECO:0000313|EMBL:EDY19203.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glycyl-tRNA synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174630E
glyQS; glycyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_12886_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6899..7897
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNV3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58526.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_12886_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7964..9412
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B65FF7
Galactokinase {ECO:0000313|EMBL:CDM64829.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Galactokinase
berkeley_reactor_200306_planktonic_scaffold_12886_9
CG_Arma_01, Armatimonadetes, Bacteria

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9467..10396
DNA (930bp) protein (310aa)
putative UTP--glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B784E5
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_12886_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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10523..11239
DNA (717bp) protein (239aa)
Translation initiation factor IF-3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF40_9BACT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
translation initiation factor IF-3
berkeley_reactor_200306_planktonic_scaffold_12886_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11232..12833)
DNA (1602bp) protein (534aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF39_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61537.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_12886_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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12981..13928
DNA (948bp) protein (316aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF37_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF61535.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_12886_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13925..14677
DNA (753bp) protein (251aa)
ABC-2 type transporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF36_9BACT
ABC-2 type transporter {ECO:0000313|EMBL:EEF61534.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nosY; ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_12886_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14754..16157
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF35_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61533.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gliding motility ABC transporter auxillary protein
berkeley_reactor_200306_planktonic_scaffold_12886_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16154..17938
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF34_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61532.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_12886_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17940..20621
DNA (2682bp) protein (894aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF33_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61531.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_12886_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20635..22941)
DNA (2307bp) protein (769aa)
Type II and III secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM19_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:EEF59147.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gspD; general secretion pathway protein D, GspD
berkeley_reactor_200306_planktonic_scaffold_12886_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(22938..23516)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM20_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59148.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_12886_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(23513..24949)
DNA (1437bp) protein (479aa)
Fimbrial assembly family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM21_9BACT
Fimbrial assembly family protein {ECO:0000313|EMBL:EEF59149.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_12886_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25048..26799)
DNA (1752bp) protein (584aa)
Type II secretion system protein E n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM22_9BACT
Type II secretion system protein E {ECO:0000313|EMBL:EEF59150.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type II secretion system protein E
berkeley_reactor_200306_planktonic_scaffold_12886_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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26953..27786
DNA (834bp) protein (278aa)
Formyl transferase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM23_9BACT
Formyl transferase domain protein {ECO:0000313|EMBL:EEF59151.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
purU; formyltetrahydrofolate deformylase
berkeley_reactor_200306_planktonic_scaffold_12886_trna_1
unknown

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comp(28174..28255)
DNA (82bp)
transferRNA Leu
Displaying 22 items

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