ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_30796_17

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(30968..31633)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH34_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 212.0
  • Bit_score: 326
  • Evalue 1.70e-86
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF60955.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.3
  • Coverage: 212.0
  • Bit_score: 326
  • Evalue 2.40e-86
LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 48.8
  • Coverage: 207.0
  • Bit_score: 177
  • Evalue 2.10e-42

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 666
ATGACCAAAGTTGCCATAGTTGAAGACAACGCCACCCTGCGCAAATATCTCGCGGAACTGATCGGCAATGTGCCGGGACTGCGTTGCGTGTGCGCCTGTGCCTCCGCCGAACAGGCGGTCGTGGAATTGCCGGCGCATAATCCCAATGTCGTTCTGATGGATATTCATCTGCCCGGCGAGTCCGGGATCGCCTGCACCGCCCGGTTGCGCGAGAAACTGCCGAACGTCCAGGTCATCATGCTGACCGTTTACAAGGACATCAAAATGATTTTTCAGGCGCTGAAGGCCGGGGCGTGCGGCTACGTTTTAAAGCGTTCCGATGACCAGGAAATTCTGGACGCGATTGCCGAGGTGAAGGCAGGCGGCGCGCCGATGACCGGCGAAATCGCCCGCATGGTGGTGCGTTCGTTTTTGGAACCGGCGAAGGCTCCCGTCACCGCCGGCACGGATCAATTGTCCGCCCGCGAAATGGAAATCCTTGCGCTGCTGGCCGAGGGCTGCCCAAACAAGGAAATCGCGGCGCGCTTGTCCATCAGCAGCGCCACGGTGCGCACGCACCTGATGCACATTTACGAAAAACTCCACGTCCGCTGTCGCACCGAGGCGGCGGCGAAATATCTGCGGTCCACCCCCGCCTCGTTGCCGGAACCCGCCGGGACCAAATAA
PROTEIN sequence
Length: 222
MTKVAIVEDNATLRKYLAELIGNVPGLRCVCACASAEQAVVELPAHNPNVVLMDIHLPGESGIACTARLREKLPNVQVIMLTVYKDIKMIFQALKAGACGYVLKRSDDQEILDAIAEVKAGGAPMTGEIARMVVRSFLEPAKAPVTAGTDQLSAREMEILALLAEGCPNKEIAARLSISSATVRTHLMHIYEKLHVRCRTEAAAKYLRSTPASLPEPAGTK*