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berkeley_reactor_200306_planktonic_scaffold_30796

Search features with annotation key words

Displaying items 1-30 of 152 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_30796_1
unknown

Not on your lists

comp(694..990)
DNA (297bp) protein (99aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_30796_2
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(968..1864)
DNA (897bp) protein (299aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R977_AMMDK
CRISPR-associated protein Cas1
berkeley_reactor_200306_planktonic_scaffold_30796_3
unknown

Not on your lists

comp(1900..5592)
DNA (3693bp) protein (1231aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_30796_4
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6691..7416
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI000311C5AB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ78093.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_30796_5
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8079..8903
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Agarivorans albus MKT 106 RepID=R9PPX5_AGAAL
Uncharacterized protein {ECO:0000313|EMBL:GAL83341.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
berkeley_reactor_200306_planktonic_scaffold_30796_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

9374..10276
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8K0_9BACT
polyphosphate-dependent ADP kinase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
berkeley_reactor_200306_planktonic_scaffold_30796_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10360..16146)
DNA (5787bp) protein (1929aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA39_9BACT
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF63380.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16549..20187)
DNA (3639bp) protein (1213aa)
Aldehyde Dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHR1_9BACT
Aldehyde Dehydrogenase {ECO:0000313|EMBL:EEF60639.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aldehyde dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_30796_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(20431..21300)
DNA (870bp) protein (290aa)
Uncharacterized protein (Fragment) n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) RepID=K5WRT1_PHACS
signal peptide protein
Signal peptide protein {ECO:0000313|EMBL:AIE84776.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_30796_10
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21390..23993)
DNA (2604bp) protein (868aa)
Enterotoxin n=1 Tax=Akkermansia sp. CAG:344 RepID=R7DY89_9BACT
Enterotoxin {ECO:0000313|EMBL:CDD95594.1}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
putative enterotoxin
berkeley_reactor_200306_planktonic_scaffold_30796_11
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(24048..25268)
DNA (1221bp) protein (407aa)
sialidase [precursor] (EC:3.2.1.18)
Sialidase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744367
Exo-alpha-sialidase {ECO:0000313|EMBL:EMI18890.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
berkeley_reactor_200306_planktonic_scaffold_30796_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25787..26968)
DNA (1182bp) protein (394aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQL4_9BACT
berkeley_reactor_200306_planktonic_scaffold_30796_13
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(27061..28374)
DNA (1314bp) protein (438aa)
Signal peptide protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA41_9BACT
hypothetical protein
Tax=RBG_13_Planctomycetes_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_30796_14
unknown

Not on your lists

comp(28371..28484)
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_30796_15
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(28489..29520)
DNA (1032bp) protein (344aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase id=2964233 bin=GWF2_Lentisphaerae_57_35 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Tax=RBG_16_Planctomycetes_59_8_curated
berkeley_reactor_200306_planktonic_scaffold_30796_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(29536..30591)
DNA (1056bp) protein (352aa)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
L-threonine 3-dehydrogenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017445FB
L-threonine 3-dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_30796_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30968..31633)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH34_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF60955.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_30796_18
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31721..34876)
DNA (3156bp) protein (1052aa)
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPI9_9BACT
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein {ECO:0000313|EMBL:EDY84458.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_30796_19
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(35362..37311)
DNA (1950bp) protein (650aa)
Alpha-L-arabinofuranosidase domain protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y2F0_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83078.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_20
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37329..40403)
DNA (3075bp) protein (1025aa)
O-glycosyl hydrolase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2Z1_CLOCD
O-glycosyl hydrolase
O-glycosyl hydrolase {ECO:0000313|EMBL:AEV69300.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
berkeley_reactor_200306_planktonic_scaffold_30796_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(40523..43231)
DNA (2709bp) protein (903aa)
Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKQ9_9BACT
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:AHG92057.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
glycoside hydrolase family 2 sugar binding protein
berkeley_reactor_200306_planktonic_scaffold_30796_22
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(43228..44634)
DNA (1407bp) protein (469aa)
Lipolytic enzyme, G-D-S-L family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024C3_SOLUE
Glycoprotein gp2
Glycoprotein gp2 {ECO:0000313|EMBL:AIE85929.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_30796_23
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44640..45854)
DNA (1215bp) protein (405aa)
Lipolytic protein G-D-S-L family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TAF4_9CLOT
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:EGD48497.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
lysophospholipase L1-like esterase
berkeley_reactor_200306_planktonic_scaffold_30796_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(46041..48113)
DNA (2073bp) protein (691aa)
alpha-N-arabinofuranosidase (EC:3.2.1.55)
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:ACB76488.1}; EC=3.2.1.55 {ECO:0000313|EMBL:ACB76488.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Alpha-N-arabinofuranosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN36_OPITP
berkeley_reactor_200306_planktonic_scaffold_30796_25

Not on your lists

comp(48138..50168)
DNA (2031bp) protein (677aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1ZME7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD50306.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
endo-1,4-beta-xylanase
berkeley_reactor_200306_planktonic_scaffold_30796_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(50370..51149)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAN2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63067.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_30796_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51232..56115)
DNA (4884bp) protein (1628aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA54_9BACT
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF63395.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane autotransporter barrel domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_30796_28
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

56408..57685
DNA (1278bp) protein (426aa)
endo-1,4-beta-xylanase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00035C7747
glycoside hydrolase family protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
berkeley_reactor_200306_planktonic_scaffold_30796_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

57783..60746
DNA (2964bp) protein (988aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH28_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF60949.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
immunoglobulin I-set domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_30796_30
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

60880..61941
DNA (1062bp) protein (354aa)
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRG4_OPITP
Tax=GWF2_Verrucomicrobia_62_7_curated
Displaying items 1-30 of 152 in total

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