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berkeley_reactor_200306_planktonic_scaffold_30796

Search features with annotation key words

Displaying items 61-90 of 152 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_30796_61
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(97482..98753)
DNA (1272bp) protein (424aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Adenylosuccinate synthetase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS13_9BACT
purA; adenylosuccinate synthase
berkeley_reactor_200306_planktonic_scaffold_30796_62
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(98914..102156)
DNA (3243bp) protein (1081aa)
Glycoside hydrolase family 2 TIM barrel n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWD9_OPITP
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_30796_63
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(102230..103768)
DNA (1539bp) protein (513aa)
Sulfatase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V2H5_TERSS
sulfatase
Sulfatase {ECO:0000313|EMBL:ADV82393.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
berkeley_reactor_200306_planktonic_scaffold_30796_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

103907..104977
DNA (1071bp) protein (357aa)
Peptidase M42 family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJQ9_9BACT
Peptidase M42 family protein {ECO:0000313|EMBL:EEF59935.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
frvX; Cellulase M or related protein
berkeley_reactor_200306_planktonic_scaffold_30796_65
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(105028..105852)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ04_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58101.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_30796_66
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(105849..107306)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEN1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61745.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoside hydrolase 44 family protein
berkeley_reactor_200306_planktonic_scaffold_30796_67
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(107335..108096)
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5ENA9_CORAD
3-oxoacyl-ACP reductase
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AKC81856.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_68
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(108167..109381)
DNA (1215bp) protein (405aa)
Altronate dehydratase n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5ENA8_CORAD
D-galactarate dehydratase
D-galactarate dehydratase {ECO:0000313|EMBL:AKC81855.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_69
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(109374..109706)
DNA (333bp) protein (111aa)
SAF protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9XIJ4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC81854.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_70
Serratia proteamaculans, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109840..110925)
DNA (1086bp) protein (362aa)
mandelate racemase n=1 Tax=Serratia sp. S4 RepID=UPI0003668F4A
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ABV43801.1}; TaxID=399741 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia proteamaculans (strain 568).;"
berkeley_reactor_200306_planktonic_scaffold_30796_71
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(110930..111598)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P7J7_9CAUL
dimethylmenaquinone methyltransferase
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:AKC81853.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_72
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(111667..112308)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YEQ4_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30814.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_73
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(112365..114404)
DNA (2040bp) protein (680aa)
Protein containing DUF1680 n=1 Tax=Rhodopirellula europaea SH398 RepID=M5SA33_9PLAN
Protein containing DUF1680 {ECO:0000313|EMBL:EMI24527.1}; TaxID=1263868 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
ATP binding protein
berkeley_reactor_200306_planktonic_scaffold_30796_74
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(114518..117268)
DNA (2751bp) protein (917aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B49323
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY50880.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
berkeley_reactor_200306_planktonic_scaffold_30796_75
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(117316..120456)
DNA (3141bp) protein (1047aa)
pectin lyase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B65E8D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93373.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_30796_76
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(120453..122108)
DNA (1656bp) protein (552aa)
Hypothetical lipoprotein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCI3_FLAJ1
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_30796_77
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(122125..123042)
DNA (918bp) protein (306aa)
Dihydrodipicolinate synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5G4_9BACT
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:EDY18369.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
dihydrodipicolinate synthase
berkeley_reactor_200306_planktonic_scaffold_30796_78
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(123039..124292)
DNA (1254bp) protein (418aa)
MFS transporter n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D02
MFS transporter
Tax=RBG_16_Planctomycetes_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_30796_79
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(124505..126193)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 RepID=R0HQ56_9BACE
polysaccharide lyase
Polysaccharide lyase {ECO:0000313|EMBL:AKC84128.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_80
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(126218..128092)
DNA (1875bp) protein (625aa)
Candidate pectin or pectate lyase Polysaccharide lyase family 1 n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCG6_FLAJ1
hypothetical protein
Candidate pectin or pectate lyase Polysaccharide lyase family 1 {ECO:0000313|EMBL:ABQ07099.1}; Flags: Precursor;; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_planktonic_scaffold_30796_81
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(128089..129804)
DNA (1716bp) protein (572aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYL9_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93374.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_30796_82
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(129808..132135)
DNA (2328bp) protein (776aa)
Uncharacterized protein n=2 Tax=Bacteroides salyersiae RepID=I9TJP2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY69576.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_83
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(132256..135615)
DNA (3360bp) protein (1120aa)
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAK4_9BACT
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF63039.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
xadA; hemagluttinin family protein
berkeley_reactor_200306_planktonic_scaffold_30796_84
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(135710..136570)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAV2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63137.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_85
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

136722..138611
DNA (1890bp) protein (630aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B584C2
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30797.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_86
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

138622..141339
DNA (2718bp) protein (906aa)
alpha-L-rhamnosidase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B3453D
rhamnosidase
Rhamnosidase {ECO:0000313|EMBL:AIE85514.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_30796_87
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(141357..142043)
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YEQ4_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30814.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_88
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(142089..145049)
DNA (2961bp) protein (987aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046490}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046490};; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
glycoside hydrolase n=1 Tax=Streptomyces chartreusis RepID=UPI000262E6A7
glycoside hydrolase
berkeley_reactor_200306_planktonic_scaffold_30796_89
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(145051..145956)
DNA (906bp) protein (302aa)
Transcriptional regulator, AraC family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ISI9_9BACT
AraC family transcriptional regulator
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_30796_90
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(145931..147082)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNR4_OPITP
hypothetical protein
Tax=RBG_13_Planctomycetes_44_8b_curated
Displaying items 61-90 of 152 in total

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