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berkeley_reactor_200306_planktonic_scaffold_30796_80

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(126218..128092)

Top 3 Functional Annotations

Value Algorithm Source
Candidate pectin or pectate lyase Polysaccharide lyase family 1 n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCG6_FLAJ1 similarity UNIREF
DB: UNIREF100
  • Identity: 50.2
  • Coverage: 566.0
  • Bit_score: 545
  • Evalue 5.10e-152
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 50.2
  • Coverage: 566.0
  • Bit_score: 545
  • Evalue 1.40e-152
Candidate pectin or pectate lyase Polysaccharide lyase family 1 {ECO:0000313|EMBL:ABQ07099.1}; Flags: Precursor;; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.2
  • Coverage: 566.0
  • Bit_score: 545
  • Evalue 7.10e-152

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Taxonomy

Flavobacterium johnsoniae → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1875
ATGAAGTTAATCCGCACCCTTCGCGGGCATTCGAGCGCGGCCATGCACAATGCCGGTGACGCCGGTTTTCACACCGGCAACGCGTTCGGAAGCGCGGGGACATCGCGCGTTGGGAAACGGGCGAAGCAGCAGGATTGGAGGTCTGCGGTAAACGTTCGTGAAGGGATGTTCGGGCTGGGACATGGTTGGCTCAAGACAGGCATTTTGCTGTTCCTGCTTTGCCTCGTTTCCCCGCCGGCCCGGGCGCTGCTGCTGGACAAGGAAATCGCCCGAATGCCCAGGGACAAACGACCCGGCCCGGAAAAAATCGCCGCCGAAGAAAAACGGCAACAAGCTTGGGCGGAATACCAAACCAATCTTCAGCAAAAACTGGCGCCGCAACTTGAGGCCTGGGCGAAGCGGGGGAAACCCTACCTGCCAAACGCCATCTTTCCGACGGACCTGCCGCAGGCGGATGTCCCGGCGTTTCCCGGGGCGGAAGGCGCCGGCAAATACAGCTTCGGCGGCCGCGGCGGCAAGGTTTACGTGGTGACGAATCTGAGTGACGGCGGGCCCGGCAGTTTTCGCGAAGCTTGTGAAGCGGCCGGTCCGCGCATCGTCGTCTTCAATGTCGCCGGCATTATTCATCTCCAGCAGCCTCTGCATATTTTGGCGCCTTACATTACGATTGACGGTCACACCGCGCCGGGCGACGGCGTTTGCATCGCCGGTTACAGCACGCTGGTGGATACGCATGATGTGGTGATTCGTTACCTGCGGTTCCGGCGCGGCGCGACCAATCTGTTTGATCGCGACGATTGTCTTGGCGGCGATCCGGTCGGCAACGTGATGATTGATCATTGTTCGTGCAGTTGGGGGCTGGATGAAAATCTTTCCATGTATCGCCACAAGGTTTATCCCAAGGATTTTTATCCGCCCGGCTCGCCCCATTTTTTGAAGTGCCCGACCTTGAACATCACGATTCAATGGTGCATTTCAACCGAGGCGTTGAACACCTACGATCACGCCTTTGGCGGCACCTGGGGCGGTTGCCGCACCAGTTTTCACCACAATCTGTTTGCGTGCAACACGGGGCGCAATCCCAGCATCGGCATGAGCTACGATTTCAACTTCGTGAACAACGTGCTGTTCAACTGGCATCATCGCACGCTGGACGGCGGTGACCAGGGCAGCCGGGTGAATTGCATCAACAATTATTTCAAGCCGGGGCCGGACACGCTGGCGGCGGTGAGTCATCGCATCGGCAAACCGCAGGCCTCCACGTTCCGGCCCGACCCGACGCGCCGTTACGGCAAATGGTATGTGGCCGGAAACATCGTGGACGGTGATCCCTCCGTGACCGAGGACAATTGGAATGGCGGCATTCAATTTGATCTGCCCGGTGCGAACCGGGAATCCGCCGCCGTGGCCACCAATCACGTTCAAGAGTTGATGGCCGCCGTGCGCGCGAACCAGCCGTTTGACATGGCCCCGCTGCGGATCGAATCGGCGGCGGCGGCGTATGTGGACGTTTTGGATCATGCCGGAGCGACGTTGCCCGACCGCGATGCCGTGGATCAACGCGCGGTGCGCCAGGCGCGGACCGGCCGGGTGGATTATCAGCAGGGCCATGGCATCATCACCGATGTTTCCCAGGTGGGCGGCTATCCCAAATACAAAGGCGAGCCGGTCAAGGACCTTTGCGCCGACGGTATTCCGCTCTCGTGGAAGGTAAAATACGGCCTGGACACCAACGATGTTGATCTGGCCCGGAAAGATTTGCGGGGCGATGGATATACCGTCATGGACAAATATCTCGATGGTCTGGATCCCACGCAGAAAATTGACTGGAACGATCCCGCGAGCAGCGTGAATACGCTCGCAGCCAGCCGATAA
PROTEIN sequence
Length: 625
MKLIRTLRGHSSAAMHNAGDAGFHTGNAFGSAGTSRVGKRAKQQDWRSAVNVREGMFGLGHGWLKTGILLFLLCLVSPPARALLLDKEIARMPRDKRPGPEKIAAEEKRQQAWAEYQTNLQQKLAPQLEAWAKRGKPYLPNAIFPTDLPQADVPAFPGAEGAGKYSFGGRGGKVYVVTNLSDGGPGSFREACEAAGPRIVVFNVAGIIHLQQPLHILAPYITIDGHTAPGDGVCIAGYSTLVDTHDVVIRYLRFRRGATNLFDRDDCLGGDPVGNVMIDHCSCSWGLDENLSMYRHKVYPKDFYPPGSPHFLKCPTLNITIQWCISTEALNTYDHAFGGTWGGCRTSFHHNLFACNTGRNPSIGMSYDFNFVNNVLFNWHHRTLDGGDQGSRVNCINNYFKPGPDTLAAVSHRIGKPQASTFRPDPTRRYGKWYVAGNIVDGDPSVTEDNWNGGIQFDLPGANRESAAVATNHVQELMAAVRANQPFDMAPLRIESAAAAYVDVLDHAGATLPDRDAVDQRAVRQARTGRVDYQQGHGIITDVSQVGGYPKYKGEPVKDLCADGIPLSWKVKYGLDTNDVDLARKDLRGDGYTVMDKYLDGLDPTQKIDWNDPASSVNTLAASR*