ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_30796

Search features with annotation key words

Displaying items 121-150 of 152 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_30796_121
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

comp(184725..185963)
DNA (1239bp) protein (413aa)
MFS transporter id=3046904 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
arabinose efflux permease family protein
Tax=GWF2_Melainabacteria_37_15_curated
berkeley_reactor_200306_planktonic_scaffold_30796_122
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

Not on your lists

comp(186002..186580)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00035E6C1A
Uncharacterized protein {ECO:0000313|EMBL:KFY81224.1}; TaxID=1420913 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseudogymnoascus.;" source="Pseudogymnoascus pannorum VKM F-4518 (FW-2643).;"
isochorismatase hydrolase
berkeley_reactor_200306_planktonic_scaffold_30796_123
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(186577..187050)
DNA (474bp) protein (158aa)
Putative MarR family transcriptional regulator n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XE89_MICPN
MarR family transcriptional regulator
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:BAK37637.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
berkeley_reactor_200306_planktonic_scaffold_30796_124
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

187212..188276
DNA (1065bp) protein (355aa)
Electron transport complex, RnfABCDGE type, D subunit id=4146969 bin=GWC2_Bacteroidetes_40_13 species=Flavobacteriales bacterium ALC-1 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
ces2A; acetyl xylan esterase-like protein
Tax=GWE2_Bacteroidetes_40_63_curated
berkeley_reactor_200306_planktonic_scaffold_30796_125
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(188285..188518)
DNA (234bp) protein (78aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pyridoxine 5'-phosphate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP98_9BACT
pyridoxine 5'-phosphate synthase
berkeley_reactor_200306_planktonic_scaffold_30796_126
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(188564..189061)
DNA (498bp) protein (166aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF85507.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
berkeley_reactor_200306_planktonic_scaffold_30796_127

Not on your lists

comp(189079..189882)
DNA (804bp) protein (268aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=743051 species="Bacteria; environmental samples.;" source="uncultured marine bacterium MedDCM-OCT-S04-C123.;"
Pyridoxine 5'-phosphate synthase n=1 Tax=uncultured marine bacterium MedDCM-OCT-S04-C123 RepID=D6PCN9_9BACT
pyridoxamine 5'-phosphate oxidase
berkeley_reactor_200306_planktonic_scaffold_30796_128
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

190005..190511
DNA (507bp) protein (169aa)
VanZ family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPA0_9BACT
VanZ family protein {ECO:0000313|EMBL:EEF58351.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_129
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

190512..193067
DNA (2556bp) protein (852aa)
ComEC/Rec2-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPA1_9BACT
ComEC/Rec2-related protein {ECO:0000313|EMBL:EEF58352.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ComEC; metallo-beta-lactamase fold hydrolase
berkeley_reactor_200306_planktonic_scaffold_30796_130
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(192936..194792)
DNA (1857bp) protein (619aa)
oligopeptide transporter id=24494066 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oligopeptide transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
berkeley_reactor_200306_planktonic_scaffold_30796_131
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(194900..195349)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIF6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60417.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_132
R_OP3X_45_10, OP3X, Bacteria

Not on your lists

comp(195412..196383)
DNA (972bp) protein (324aa)
hypothetical protein id=15192312 bin=GWC2_NOV_55_46 species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_NOV_55_46 organism_group=Proteobacteria
methyltransferase
Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
berkeley_reactor_200306_planktonic_scaffold_30796_133
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

196490..197311
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIF7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60418.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_30796_134
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(197318..198622)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIF8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60419.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
CBS domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_30796_135
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(198619..199614)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIF9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60420.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_136
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(199611..200819)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIG0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60421.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_137
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

201343..202578
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003815BDA
Threonine synthase {ECO:0000313|EMBL:EEF58278.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
threonine synthase
berkeley_reactor_200306_planktonic_scaffold_30796_138
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

202584..202859
DNA (276bp) protein (92aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI0003612F13
ThiamineS protein {ECO:0000313|EMBL:EEF58279.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative molybdopterin converting factor small subunit MoaD
berkeley_reactor_200306_planktonic_scaffold_30796_139
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

202962..203255
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPE0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58280.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
napF; Ferredoxin
berkeley_reactor_200306_planktonic_scaffold_30796_140
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

203367..204383
DNA (1017bp) protein (339aa)
Sodium/calcium exchanger membrane region n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIF5_9BACT
Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:EEF60416.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_141
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

204450..204818
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRB3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57600.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_142
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

205154..206164
DNA (1011bp) protein (337aa)
PEP motif putative anchor domain protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IYB0_9BACT
anchor protein
Anchor protein {ECO:0000313|EMBL:AHF89078.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_30796_trna_1
unknown

Not on your lists

comp(206272..206361)
DNA (90bp)
transferRNA Ser
berkeley_reactor_200306_planktonic_scaffold_30796_143
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(206550..207746)
DNA (1197bp) protein (399aa)
Glycosidase, PH1107-related n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XP8_SOLUE
PH1107-like glycosidase
Glycosidase, PH1107-related {ECO:0000313|EMBL:ABJ85567.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_30796_144
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(207743..209611)
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4RH42_9CAUL
Glycoside hydrolase family 97 {ECO:0000313|EMBL:KGK64060.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
Glycoside hydrolase 97
berkeley_reactor_200306_planktonic_scaffold_30796_145
unknown

Not on your lists

comp(209871..210542)
DNA (672bp) protein (224aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_30796_146
RLO_RIF_OD1_11_47_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

211069..212208
DNA (1140bp) protein (380aa)
Uncharacterized protein id=3745116 bin=GWF2_Lentisphaerae_57_35 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
sulfatase-modifying factor protein
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_47_20_curated
berkeley_reactor_200306_planktonic_scaffold_30796_147
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(212205..213332)
DNA (1128bp) protein (376aa)
DGQHR region n=1 Tax=mine drainage metagenome RepID=T1D6X4_9ZZZZ
DGQHR domain-containing protein {ECO:0000313|EMBL:CDM64088.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
berkeley_reactor_200306_planktonic_scaffold_30796_148
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

213868..214365
DNA (498bp) protein (166aa)
Histidine kinase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3M9_SPHS2
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ADZ79417.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_30796_149
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(214395..215285)
DNA (891bp) protein (297aa)
OmpA/MotB domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XER4_9BACT
OmpA/MotB domain protein {ECO:0000313|EMBL:EEF61778.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chemotaxis protein MotB
Displaying items 121-150 of 152 in total

View Taxonomy