ggKbase home page
Advanced Search
Search Help

berkeley_reactor_200306_planktonic_scaffold_30796_27

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(51232..56115)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA54_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 27.8
  • Coverage: 1782.0
  • Bit_score: 432
  • Evalue 1.20e-117
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF63395.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 27.8
  • Coverage: 1782.0
  • Bit_score: 432
  • Evalue 1.70e-117
outer membrane autotransporter barrel domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 27.4
  • Coverage: 1801.0
  • Bit_score: 327
  • Evalue 1.20e-86

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 4884
ATGAACCCAACAATAGCAACGAATTCAATTCGTCATACAATTCTCAGAACCCTTTCGGGCAGCCTGGTATGCGCGGCGCTGGGCCTGGCACCGGGCCTGGCCGGAGCGGGCGATGTCAACATGACAACCGGTGACGGATACGGTGAACATTCTTTCGACACGGCCGGCCATTGGGACTCGGGGGCGGCGCCAACGGCGGGTAATAACTATTTCACGGCTTATATTCTGCGCAGCCCCAATGCGGGTGCTTCCGCTGTGACGTTTCAAGGGGATTCGCTCACGCTCCAGCCCGGCGGCGCCATTTATCAAAAGCTCAATCCGCTGGTGATGACCGTCAATGTGCTCACGAACATGGGCCGGGTCTCCAATGCGCAGGGAGGAGCCTTTACCATTCTGGGCAACATGTATGTTCCCACCGACAATGTTGGCGGCGGCATGGATACCGGATCAGGCAACACCGGTGCCGGGGACAGTCGTTCCATTACCAACGGCATGACCATTCATGGCGCGGGCGGCCTGACGAATTATACGGCGGACGCGAACTGGCCCAATACGCCGCAAGCGCAGGGCACGGTAGTTTACACCGGGGATAACACGGATTTCACCGGCCCGCAAATCGCCATTCGCAACACGGTTATTCAAGTGGCTTCCCAGTCAAATCTGGGCGGCAATCCGGCGGCCTTTAATCCGGGACAACTCACGCTGGACAACGGGATTTTGCGTCCGAGCGCGAGCTTCGCGCTCGATCATGCCAACAGCGGCATCACGATCGGCGCGGGTAACGGCAGCCTGGACATCGCGGCGGGCATAACGCTGACGAACGCCGAACCGTTGGCGGGCGGCGGCACGCTGATTTTGACCAATGCCGGCACGCTGGTGCAGGTGGGGTCGGCCACCAATTTCACCGGCAAGGTGCTGGTCGGCAACGGCACCCTGATGCTGGGAACGGGAGATGCGCTGGCCGGACCGAACACCATTTCCGTCAGCAGCGCGGCCACGGTGGATGCCACCGCGGCAGGAATCACCCTGGCCGGCGGCCAGACGCTGGCGGGAAATGGCACCGTCAATGGCACGGTGACGGCCGGCACGGACAGCAAAATCAGCCCCGGGGGAACCGGCGTGGCGGCCAGCCTGGCCGTCGGCAATCTGACGTTGACGGGCGGGGCGAACTTGGCCTGTGATTTTTTGACGACCAATGACATGGTGGTTGTGAACGGCGATTTGTCGGCCAGCGGCGTCACCGAAATTCAACTGGTCAACGTGCCGGCCAATGGAACCTACACCCTGATGACTGTTGGCGGCACCTTGGGTGGTTCGGCGGCGAGTTTTCAAGTGCAGGCTTTGACCACCCGCACCAAGAGTTACAGCGTCAGCTATGATTCCACCAGCACGCCCAAACGGGTGTTGTTGACCGTCACGGGCAGCGGCTCGGCCGCAGACCTGGTCTGGCAGGGCGGTGCGAGCGATGTGTGGGATATTGACACCACCGCCAACTGGCTCAACGGCGCCGGCACAGACGTGTATTATGATTCGGATACGGTGAGCTTCACGGATGCGGGAGCCGGCGTTCAACCGACGCTCGACGTGGTGGTGAATCCCGCCTGGGTCAATTTTGATTCCAGTGCGGACTACGCGTTGACCAGCCCGACCGGGAACGGCCAGATCGCCGGCCTGGGCGGCCTGTCCAAAGGCGGCACCGGCACGCTGACCTTGTCCACGACGAACACTTATGTGGGCGGCACCATCGTGACCAACGGTGTTTTGAAACTTGGCGTGCCGCAGGCTTTGGGCAATCCGTCCGGCGCGACGCCCCTGGCTTCCATTTCCAATACGGGAACCCTCGACCTTAACGGCAGCGCGTTGGATGCGACCTATACCAGCCCGGTTGACATCAGCGGCACCGGCGCGAGCGCCACCCAGGGCGCCATTGACAATACGGTCGGCGGTTTGACTTCAGGCGGTGGCGATATTGGCATCGGCACGCTTGCTCTGACTGGCGACGCCACGATCAGTGCCAGCGCCAACTGGCAAATCGGAAACACCGGTTCCGGGATTGTGGGGAATGGCCATGCCCTCACCTTTACCGGCCCCAGCTATCTCTACTTGAAACAGGCGGCCGCGAGCCCGTTGAGCGGGCTGGTGATTTCCGGTGGCGGGGTGCTGTTCTGGGACCACGCGGACGCGGCCGGCAACACGGCCACGATTACCCTGACCAACAGCGGTTTCATTGACACCTGGAATCCGGCCACTTATTTCCAGGGCCTGACGTTTTTTAACCCGCTGGTTGTGAACGGTTCGGGAATGATCATCAATTACCGCCAGCCGTTTAATCATCCGGGCTCGGACATTTTCAACGGCTCGGTGATCATCAACAACGGCTCGCTGACCTTTTCCAATGTCGCGCATGTCGGCTCCAACACTTACAACAATAACACGGAGCAATTTGGCCGGACGACGATGAACGGAAATATCAGCGGCAACGGCGGTGTGAATGTGATCGGCGGACTCGACTATCCCGTGATTTCCCCGAGCGGCGCCATCTATGGCGGCAATCTGGTGACGCTGAATGGCAACAACTCTTACAGTGGACCGACGATCGTATCCAATCTGGTTCAACTGCTGATTTCCACGGCGAATCAAAGTGGCGGCGCTTACACGGTCGTCAACGACGGCACGTTGGATGTGACAACCGCCTCGGGCCGGCCGACCATTCCCATGTCGAGCCTGACCCTGGACATGGGCAGCTATGGCGGCGGCAATCTCGGGTTCACCCGCCTGACCCAGATGCCGTCCAGTCCGGTGATTTACGCCACCAACCTGAACATTGTCTCTTCCGCGACCATTCTGCCGCCCCTCGCCGGATATGCGGTGGGCCAATTTCCCCTGATCAAGTATGACAACATCAGCGGCGCCGGTTTTGCCGGACTGCAGTTGCTCGGGCTGCCCACCGGTGTGACCGCCACCCTGGTGGACAATGCCGCGAACAAAACCATTGATCTGCAAGTCACCACGGTGGGCATCACGTGGACGGGAAGTTCATCCTCCGACTGGGACCTGGGTATCACGCCGAACTGGACGAATCCCGTATCCATGTCAACCGATTATTATTCCGACGGGGAAGGCGTGGTTTTCGATGACACCGCTGCCAGCTTCACGGTCAACCTCAACGGAGCGCTGCTGCCGGGCGGCGTGACCATCAACGCATCCAAGGATTACACCTTCAACACCACGGCGGGCGGCATTGGGGGCAGCGCCGCGTTCGTCAAGAATGGTTCCGGCACATTGACCGTGGCTTGCACCAACAACACCTTCACCGGTGGCACGTATATCAACGGCGGCACGCTGAAGCTGGCGGATTTGAATTACGCCTATCCTTACGGCGGCGGCGCGTTGAACAACAACCTGGGCGCGGTCACCGTGGGCGATGGCGCCACCCTGGATGTGAATGCCGTCCAGGTGCCCAATTTCCAGCAATACGGTCCCGCCGGCTACAATGTTTACATCAGCGGCGCGGGCGTGGGCGGCAACGGCGCGTTGGTCAATAACAACACCAACAACAATGACAATGCCGATCCCGGTTATGTGACCCTCACGGGCGATGCCACGGTGGGTGGCATCGGCGATCTCAACATCCGCCACGGCGGTTTCCCGGAACTCAATTCCCAGAGCAGCGCCTACACCCTGACCAAGGTCGGCCCGGCTTCCTTCCGCATCCGCTACGTGACCGCCGTCAGCACGAATTTCGGTCCGGTCAACATCCTTCAGGGCATCGTCAGCTATGAATCCAGTTCGCCGCTGGGCTTTGGTGATCCCACCAAGCCGGTGATGATCGCCGGGGGCGCGGGCTTTGCCTGGGGCACGGCGGCCGCAGCCTGCACCAAGCCGTTGATCTGCAGCAACAACGCGACGGTTTATGGCTATAATGTGACGAACAACGTGTTCGCGGCGCCGGTGGATCTGGAGGGCGGCAACGTGAATCTTAACGCGAATTATTTCCATGGAATGATCTTCTCGAACGTTCTGAGCGGCGCCGGCGGCGTGTCCGTGCTCTACAACAGCTACGTCACTTTTGCGGCCGCCAATACTTACACCGGCGACACCACGGTCTGGCGCTGCAACGCGGCTCCCGGTTCCTCATTGCGCCTGGTTGGCGATGGTGCCCTCAACAACTCCGCAAACATCACGCTGCAAGGCATCGTGGACGGCCAGGCTTACGCGGGCGGATTGAATGTGAGCGGTCGCACGGACCACACGCTGACCCTGGGCAGCGGCCAAACGCTGCGGGGTGACAATGGTTCTTACGTCGCGGGTGATGTGGTGGCCGGTTCCGGCGCGATCATCATGCCCGGCGGAGCGGCCAATGCCCAATACATGACCTTCAGCAACAACCTGACGCTGTCCGCGGGCAGCGTGGTGGCGATGGATGTCGGCCTTGATGCCGGAATCACCAACGACCTTATCAACGTCGCCGGCACCAACCATTACGGCGGCACGCTGCAACTGGCAAGCCTGGGCGCGACAGCGCTGACGAACGGCGCGTCCTTCAAGCTGTTCAACGCGGCGCATTTCACCGGCGATTTTGCCAGCATCAGCGGCTCGCCCGGAGCGGGACTGAGCTGGTCGTTTGACCCCGCGACCGGGGTGGCCACCGTGGTGGGCTCGGCGCCGTCCTCGCCCTCCATCGGCATGTCGGTGTCCGGTAATCAACTGACCTTGTCCTGGCCGGCCAGTTATTTGGGTTACACGCTGCAGGCGCAGACCAACGCGCTCAGCACCGGCCTTTCCAATAATTGGGTGGATGTGCCCGGCAGCAGTGCCGGCACAAACAGCGTCATCATCATTGATCCCAGTATGCCGAGCGTTTTCTACCGCCTGCGGCAATAG
PROTEIN sequence
Length: 1628
MNPTIATNSIRHTILRTLSGSLVCAALGLAPGLAGAGDVNMTTGDGYGEHSFDTAGHWDSGAAPTAGNNYFTAYILRSPNAGASAVTFQGDSLTLQPGGAIYQKLNPLVMTVNVLTNMGRVSNAQGGAFTILGNMYVPTDNVGGGMDTGSGNTGAGDSRSITNGMTIHGAGGLTNYTADANWPNTPQAQGTVVYTGDNTDFTGPQIAIRNTVIQVASQSNLGGNPAAFNPGQLTLDNGILRPSASFALDHANSGITIGAGNGSLDIAAGITLTNAEPLAGGGTLILTNAGTLVQVGSATNFTGKVLVGNGTLMLGTGDALAGPNTISVSSAATVDATAAGITLAGGQTLAGNGTVNGTVTAGTDSKISPGGTGVAASLAVGNLTLTGGANLACDFLTTNDMVVVNGDLSASGVTEIQLVNVPANGTYTLMTVGGTLGGSAASFQVQALTTRTKSYSVSYDSTSTPKRVLLTVTGSGSAADLVWQGGASDVWDIDTTANWLNGAGTDVYYDSDTVSFTDAGAGVQPTLDVVVNPAWVNFDSSADYALTSPTGNGQIAGLGGLSKGGTGTLTLSTTNTYVGGTIVTNGVLKLGVPQALGNPSGATPLASISNTGTLDLNGSALDATYTSPVDISGTGASATQGAIDNTVGGLTSGGGDIGIGTLALTGDATISASANWQIGNTGSGIVGNGHALTFTGPSYLYLKQAAASPLSGLVISGGGVLFWDHADAAGNTATITLTNSGFIDTWNPATYFQGLTFFNPLVVNGSGMIINYRQPFNHPGSDIFNGSVIINNGSLTFSNVAHVGSNTYNNNTEQFGRTTMNGNISGNGGVNVIGGLDYPVISPSGAIYGGNLVTLNGNNSYSGPTIVSNLVQLLISTANQSGGAYTVVNDGTLDVTTASGRPTIPMSSLTLDMGSYGGGNLGFTRLTQMPSSPVIYATNLNIVSSATILPPLAGYAVGQFPLIKYDNISGAGFAGLQLLGLPTGVTATLVDNAANKTIDLQVTTVGITWTGSSSSDWDLGITPNWTNPVSMSTDYYSDGEGVVFDDTAASFTVNLNGALLPGGVTINASKDYTFNTTAGGIGGSAAFVKNGSGTLTVACTNNTFTGGTYINGGTLKLADLNYAYPYGGGALNNNLGAVTVGDGATLDVNAVQVPNFQQYGPAGYNVYISGAGVGGNGALVNNNTNNNDNADPGYVTLTGDATVGGIGDLNIRHGGFPELNSQSSAYTLTKVGPASFRIRYVTAVSTNFGPVNILQGIVSYESSSPLGFGDPTKPVMIAGGAGFAWGTAAAACTKPLICSNNATVYGYNVTNNVFAAPVDLEGGNVNLNANYFHGMIFSNVLSGAGGVSVLYNSYVTFAAANTYTGDTTVWRCNAAPGSSLRLVGDGALNNSANITLQGIVDGQAYAGGLNVSGRTDHTLTLGSGQTLRGDNGSYVAGDVVAGSGAIIMPGGAANAQYMTFSNNLTLSAGSVVAMDVGLDAGITNDLINVAGTNHYGGTLQLASLGATALTNGASFKLFNAAHFTGDFASISGSPGAGLSWSFDPATGVATVVGSAPSSPSIGMSVSGNQLTLSWPASYLGYTLQAQTNALSTGLSNNWVDVPGSSAGTNSVIIIDPSMPSVFYRLRQ*