ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_37596_5

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(3414..4703)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000380A464 similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 445.0
  • Bit_score: 415
  • Evalue 4.20e-113
Pectate lyase {ECO:0000313|EMBL:KFC61505.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.6
  • Coverage: 420.0
  • Bit_score: 402
  • Evalue 6.70e-109
pectate lyase similarity KEGG
DB: KEGG
  • Identity: 48.1
  • Coverage: 418.0
  • Bit_score: 384
  • Evalue 2.90e-104

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Massilia sp. LC238 → Massilia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1290
ATGAAATTCCCCGCCTGGTTTTGCCTGCTGTTGTGCTTCGTCGGCCTGGTTGCGAGGCTGCCCGCGACCATCATTGGCACCAATTCACCGGCGCCGCCCTTGACCATGAAGCGCGTGGCGGACTTGCCCGCGTGGAAGGCTTACCTGGAAAAATCCATTCGTCAACGCCAGGCGGACCAGGATTTTATTCACGCCGAGATGAAGGCGCATCATCTGACCAACGCCATCGAGCCGCCCACGTGCGGTTCGCCCCGGACCCCGCTCAACCGCCCGGACGCCTGGTGTGGCGGCGCCGAGGCGCGGCGGATGGCGGATTGTGTGGTGTCATTTCAGACTCCGGCCGGCGGCTGGAGCAAGCACACGGATTACACCCAACATGTGCGCGCGCCCGGTGAATTGTTTGCCAATGGCAGCAACTCCCGTTTCCTTGTTCCGAACGACTTTGACCGCCCCACCGATGTTCACTGGAGCTATGTTGGCACCTTTGACAACGGCGCCACCACCACCGAGATGCGGTTTCTGGCCAGGGTGATTTCGGCGGATCCAACCAACCATGCCGCCTGGCGCGCGGCGTTTGCGCGCGGGTTGGATTACATTTTTGCGGCGCAATTTCCGAACGGCGGCTGGCCGCAGGTCTGGCCGCTGCAGGGCGGTTACCACGACGCGGTGACGTTCAATGACAACGCGATGTTAAACGTCATGAAGTTGTTGCGCGATGTCTCAACCGGCGCGGCCGGCTATGCTTTCGTGCCGTCGGAGTTGCGCGCGCTGGCCGCCGCCAGCTGGCAACGCGGGCTGGATTGCATTCTCGTCGCGCAGATCCGGGTGGACGGCCAACGCACGGTGTGGTGCCAGCAACATGACGCGATCACGTTGCAGCCGGTGGCGGCGCGGAACTATGAAATGCCGTCCGAATCGTCCAGCGAGAGCGCGACGATCACACTGTTTCTGATGCAATTGCCGGACCCGGATTCAAATGTTGTTGCGGCGGTAAACGCAGCGGCCGCCTGGTTTCAGCGAACGCAGATCATGGGCAAGGCGTTCCGTTTTGTGGGTGGCCAGGGGCGTGAGCTGGTGAACGCTCCGGGCAGCGGGCCGATTTGGTCGCGCTATTATCAGATCGGAACCGACATCCCGATTTTCGGTGATCGCGACAAAACCATTCACGACAACGTCAACGAAATTTCCGCGGAGCGCCGCCAGGGTTATGGCTGGTTCCAGGCCGCGGGCGAAAGTGTCCTCCGGCGTTATGCGAAATGGCGGAACGCCCATTTGCCGGCGACGAATTGA
PROTEIN sequence
Length: 430
MKFPAWFCLLLCFVGLVARLPATIIGTNSPAPPLTMKRVADLPAWKAYLEKSIRQRQADQDFIHAEMKAHHLTNAIEPPTCGSPRTPLNRPDAWCGGAEARRMADCVVSFQTPAGGWSKHTDYTQHVRAPGELFANGSNSRFLVPNDFDRPTDVHWSYVGTFDNGATTTEMRFLARVISADPTNHAAWRAAFARGLDYIFAAQFPNGGWPQVWPLQGGYHDAVTFNDNAMLNVMKLLRDVSTGAAGYAFVPSELRALAAASWQRGLDCILVAQIRVDGQRTVWCQQHDAITLQPVAARNYEMPSESSSESATITLFLMQLPDPDSNVVAAVNAAAAWFQRTQIMGKAFRFVGGQGRELVNAPGSGPIWSRYYQIGTDIPIFGDRDKTIHDNVNEISAERRQGYGWFQAAGESVLRRYAKWRNAHLPATN*