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berkeley_reactor_200306_planktonic_scaffold_37596

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_37596_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..140
DNA (138bp) protein (46aa)
IS4 family transposase n=2 Tax=Proteobacteria RepID=K6CS20_PSEST
transposase, IS4 family
Uncharacterized protein {ECO:0000313|EMBL:EPD38756.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
berkeley_reactor_200306_planktonic_scaffold_37596_2
unknown

Not on your lists

comp(127..315)
DNA (189bp) protein (63aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_37596_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(371..2041)
DNA (1671bp) protein (557aa)
Inorganic diphosphatase {ECO:0000313|EMBL:EDY17854.1}; EC=3.6.1.1 {ECO:0000313|EMBL:EDY17854.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037B8BAB
pyrophosphatase
berkeley_reactor_200306_planktonic_scaffold_37596_4
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2154..3392
DNA (1239bp) protein (413aa)
Glycoside hydrolase family 28 n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NXU1_GRAMM
glycoside hydrolase family protein
Glycoside hydrolase family 28 {ECO:0000313|EMBL:AEU34436.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
berkeley_reactor_200306_planktonic_scaffold_37596_5
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3414..4703)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000380A464
Pectate lyase {ECO:0000313|EMBL:KFC61505.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
pectate lyase
berkeley_reactor_200306_planktonic_scaffold_37596_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4738..5628)
DNA (891bp) protein (297aa)
Diacylglycerol kinase catalytic region n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF95_9BACT
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:EEF61593.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lcb5; Diacylglycerol kinase family enzyme
berkeley_reactor_200306_planktonic_scaffold_37596_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5963..7054
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58904.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_37596_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

7097..7978
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFA0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61598.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_37596_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7975..11625)
DNA (3651bp) protein (1217aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Recombination helicase AddA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFA1_9BACT
recombination helicase AddA
berkeley_reactor_200306_planktonic_scaffold_37596_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11835..13640
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI19_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60512.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_37596_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13666..15414
DNA (1749bp) protein (583aa)
Cytochrome-c peroxidase {ECO:0000313|EMBL:EEF59286.1}; EC=1.11.1.5 {ECO:0000313|EMBL:EEF59286.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Cytochrome-c peroxidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLN8_9BACT
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_37596_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15454..15879)
DNA (426bp) protein (142aa)
OsmC-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUZ2_KORVE
OsmC-like protein
OsmC-like protein {ECO:0000313|EMBL:ABF39308.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
berkeley_reactor_200306_planktonic_scaffold_37596_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15983..16252)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC53_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62521.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_37596_14
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(16477..17373)
DNA (897bp) protein (299aa)
transcriptional regulator, LysR family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174565A
Transcriptional regulator {ECO:0000313|EMBL:EIP99004.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_37596_15
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17437..18195
DNA (759bp) protein (253aa)
methyltransferase type 11 n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174565B
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABQ07619.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_planktonic_scaffold_37596_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18238..19455)
DNA (1218bp) protein (406aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQD3_9BACT
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF57957.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sigma factor, ECF subfamily protein
berkeley_reactor_200306_planktonic_scaffold_37596_17
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

19951..21399
DNA (1449bp) protein (483aa)
Arabinogalactan endo-1,4-beta-galactosidase (EC:3.2.1.89)
Arabinogalactan endo-beta-1,4-galactanase {ECO:0000256|RuleBase:RU361192}; EC=3.2.1.89 {ECO:0000256|RuleBase:RU361192, ECO:0000313|EMBL:CCW36487.1};; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
Arabinogalactan endo-1,4-beta-galactosidase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0F046_9BACT
berkeley_reactor_200306_planktonic_scaffold_37596_18
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(21451..25026)
DNA (3576bp) protein (1192aa)
Heavy metal efflux pump, CzcA family id=3377417 bin=GWF2_Lentisphaerae_50_93 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
CzcA family heavy metal efflux protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_37596_19
unknown

Not on your lists

comp(25031..25267)
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_37596_20
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(25290..27038)
DNA (1749bp) protein (583aa)
Membrane-fusion protein id=4384351 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_37596_21
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(27277..28644)
DNA (1368bp) protein (456aa)
Outer membrane efflux protein id=3612351 bin=GWF2_Lentisphaerae_49_21 species=Leptospira sp. B5-022 genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
outer membrane efflux protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_37596_22
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(28720..29076)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017449E4
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_37596_23
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(29202..29663)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IJF7_PHYMF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM05395.1}; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
berkeley_reactor_200306_planktonic_scaffold_37596_24
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

Not on your lists

29976..30905
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTJ6_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEH26507.1}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
berkeley_reactor_200306_planktonic_scaffold_37596_25
unknown

Not on your lists

31080..31427
DNA (348bp) protein (116aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_37596_26
unknown

Not on your lists

31981..32298
DNA (318bp) protein (106aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_37596_27
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

Not on your lists

32301..32792
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTJ7_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEH26508.1}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_37596_28
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

Not on your lists

32776..33363
DNA (588bp) protein (196aa)
RNA polymerase sigma factor n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTK1_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
RNA polymerase subunit sigma-24
berkeley_reactor_200306_planktonic_scaffold_37596_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33366..35294)
DNA (1929bp) protein (643aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR8_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF57120.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter-like protein
berkeley_reactor_200306_planktonic_scaffold_37596_30
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35304..35768)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI000347AFFB
Putative uncharacterized protein {ECO:0000313|EMBL:EGV18253.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
hypothetical protein
Displaying items 1-30 of 57 in total

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