name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_planktonic_scaffold_37596_31
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(35782..36021)
|
Uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ISD4_9CHRO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_32
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(36119..37624)
|
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Lysine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAA4_9BACT
lysyl-tRNA synthetase
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
38733..39305
|
Magnesium and cobalt transport protein CorA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR33_9BACT
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
magnesium and cobalt transport protein CorA
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(39368..39862)
|
Uncharacterized protein (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSK2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57162.1}; Flags: Precursor; Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
39942..42317
|
Carbon starvation protein CstA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK37_9BACT
Carbon starvation protein CstA {ECO:0000313|EMBL:EEF59860.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cstA; protein CstA
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
42472..43044
|
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK35_9BACT
nicotinate-nucleotide adenylyltransferase
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
43201..43578
|
Ribosomal silencing factor RsfS n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK34_9BACT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
iojap-like ribosome-associated protein
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(43607..43936)
|
PUR-alpha/beta/gamma DNA/RNA-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK33_9BACT
PUR-alpha/beta/gamma DNA/RNA-binding {ECO:0000313|EMBL:EEF59856.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PurA family ssDNA and RNA-binding protein
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_39
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(44078..45382)
|
PhoH family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK31_9BACT
PhoH family protein {ECO:0000313|EMBL:EEF59854.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PhoH family protein
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_40
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(45766..47766)
|
DNA mismatch repair protein MutL n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKB3_9BACT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
mutL; DNA mismatch repair protein
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_trna_1
unknown
|
Not on your lists |
48262..48335
|
transferRNA Asp
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_41
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
48492..52325
|
Transglutaminase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAT3_9BACT
Transglutaminase domain protein {ECO:0000313|EMBL:EEF63118.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transglutaminase
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_42
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria
|
Not on your lists |
comp(52329..54356)
|
Rhamnogalacturonate lyase family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZK5_9BACT
Rhamnogalacturonate lyase family
Rhamnogalacturonate lyase family {ECO:0000313|EMBL:CCW36361.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_43
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
54572..55981
|
Conserved repeat protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CBK2_9GAMM
Conserved repeat protein {ECO:0000313|EMBL:EIJ40995.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
serine protease
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
55986..57092
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM03_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59131.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_45
Candidatus Methylopumilus planktonicus, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(57231..57572)
|
nitrogen regulatory protein P-II 1 n=1 Tax=Methylotenera mobilis RepID=UPI0003749648
Regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) {ECO:0000313|EMBL:CEZ19296.1}; TaxID=1581557 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-2-53.;"
nitrogen regulatory protein P-II
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_46
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(57736..59352)
|
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:AEV99230.1}; EC=3.2.1.37 {ECO:0000313|EMBL:AEV99230.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Xylan 1,4-beta-xylosidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAQ0_NIAKG
xylan 1,4-beta-xylosidase
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_47
unknown
|
Not on your lists |
59654..59752
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_37596_48
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
59826..61070
|
Arabinose efflux permease family protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2II14_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIF30366.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
major facilitator superfamily multidrug (fosmidomycin) efflux transporter
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(61128..62039)
|
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036A9E54
Signal recognition particle-docking protein FtsY {ECO:0000313|EMBL:EEF58457.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell division protein FtsY
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(62221..63069)
|
PHP domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNZ2_9BACT
PHP domain protein {ECO:0000313|EMBL:EEF58458.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative metal-dependent phosphoesterase, PHP family
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(63407..63910)
|
N utilization substance protein B homolog n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNZ3_9BACT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
antitermination protein NusB
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
64055..64669
|
Transcriptional regulator, TetR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMU4_9BACT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEF58869.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
TetR family transcriptional regulator
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
64718..65044
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMU5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58870.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_54
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
65097..66239
|
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMU6_9BACT
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEF58871.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
membrane protein
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_55
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria
|
Not on your lists |
66271..69468
|
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYJ2_OPITP
hydrophobe/amphiphile efflux-1 (HAE1) family protein
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:ACB77088.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_37596_56
unknown
|
Not on your lists |
69465..69602
|
This feature has no annotations |