ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_49371_3

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(3154..4332)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744964 similarity UNIREF
DB: UNIREF100
  • Identity: 56.2
  • Coverage: 386.0
  • Bit_score: 450
  • Evalue 1.10e-123
alginate lyase similarity KEGG
DB: KEGG
  • Identity: 64.7
  • Coverage: 363.0
  • Bit_score: 509
  • Evalue 7.10e-142
Alginate lyase {ECO:0000313|EMBL:AKC83665.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.7
  • Coverage: 363.0
  • Bit_score: 509
  • Evalue 3.50e-141

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Verrucomicrobia bacterium IMCC26134 → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1179
ATGATTCACTCCTGTGCCAAAATCGCGCGGCTGTTGTCCGGCCTGCTTTTGCTGGCTGCCACGACGGCTCTTGCCGCGCCCACACTCGATGTCGCCGCCATTGACCACGACCGCATTCTGAAAGCTGCCGACGCCGCGCTTCAGCAGCCGCCCATCACCATCACGGCCTACCACGCGAAACTCAGCGAAGGCGGGCCGCACGATTATTATTCCAATGGCGACTACTGGTGGCCCAATCCTAAAACCACCAACGGCCTGCCTTACATCAAGCACGACGGCGAAACCAATCCCGATAATTTCAACCAGCATCGCGAGTGCTTATGGCGATTGAAAGACGCCGTCGCCGCCCTGGGCGCGGCTTACAAAATCACCGGCGACGATCGTTACGTGAAGAAAGCCGTCGAATTGCTGCGCGTGTTCTTTCTCGATCCCGAAACGCGCATGAATCCGAACCTGCAATACGCGCAGGCCATTCCCGGCGTTTCCACCGGACGCGGCATCGGCATCATTGACACGCTGCACTTGATTGAAATTCCCAAGGCCGTGGAAGCGATGGAAAAATCACCAGCCTTTCCACCCGCCGTGCTCGCCGGATTGAAGCAGTGGTTCGCGGAATATGTCCACTGGATGACCACCAGCAAAAACGGCCATGACGAAGCCAACACGACCAACAACCACGCCGTCGCCTTTTGGCTGCAAGTCGCCGTGTTTTCGCAGTTCGCCGGCAATGAAGCGCAACTCGCCGAGTGCCGCCGGCGGTTCAAGGAAGTGTTCGTGCCCAAACAAATGGCACCGGACGGCAGTTTCCCGCGCGAACTGGCGCGCACCAAGCCCTACGGCTATTCCATCTTCCAACTCGACAACCTGGCCACGCTTTGCCAGGTGCTTTCCACCACCAACGACGACCTCTGGAATTTCACGCTCCCGGACGGACGCGGCCTGCGCAAAGCCGTCGCCTATCTCTATCCCTATCTGGCCGACAAATCCAAATGGCCGCTCAAGCCGGACGTGCAAGCGTGGAACGGCTGGCCCGCCCGCCAGCCGAATCTGCTCTTCGCCGGACTCGCTTATGGAAACCAGAATTACCTCGACCTCTGGAAGAAACTTCCCGCCGATCCGACGAATGAGGAAGTGCGCCGCAACATCGCCATTACGCAGCCCGTTTTGTGGGTGAAATGA
PROTEIN sequence
Length: 393
MIHSCAKIARLLSGLLLLAATTALAAPTLDVAAIDHDRILKAADAALQQPPITITAYHAKLSEGGPHDYYSNGDYWWPNPKTTNGLPYIKHDGETNPDNFNQHRECLWRLKDAVAALGAAYKITGDDRYVKKAVELLRVFFLDPETRMNPNLQYAQAIPGVSTGRGIGIIDTLHLIEIPKAVEAMEKSPAFPPAVLAGLKQWFAEYVHWMTTSKNGHDEANTTNNHAVAFWLQVAVFSQFAGNEAQLAECRRRFKEVFVPKQMAPDGSFPRELARTKPYGYSIFQLDNLATLCQVLSTTNDDLWNFTLPDGRGLRKAVAYLYPYLADKSKWPLKPDVQAWNGWPARQPNLLFAGLAYGNQNYLDLWKKLPADPTNEEVRRNIAITQPVLWVK*