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berkeley_reactor_200306_planktonic_scaffold_49371

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_49371_1
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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651..1436
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NRV1_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ78666.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
berkeley_reactor_200306_planktonic_scaffold_49371_2
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1686..2792)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2FB59
Uncharacterized protein {ECO:0000313|EMBL:ESQ87378.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_49371_3
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

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comp(3154..4332)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744964
alginate lyase
Alginate lyase {ECO:0000313|EMBL:AKC83665.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_49371_4
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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4731..6992
DNA (2262bp) protein (754aa)
afcA1; alpha-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AXA2_9BACT
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_49371_5
unknown

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7403..8344
DNA (942bp) protein (314aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_49371_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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8432..12793
DNA (4362bp) protein (1454aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKS0_9BACT
family 6 carbohydrate binding protein
berkeley_reactor_200306_planktonic_scaffold_49371_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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12874..13725
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIT1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_49371_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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13806..14750
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHD1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60766.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_49371_9
Pseudomonas sp. GM24, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14887..21663
DNA (6777bp) protein (2259aa)
Autotransporter-associated beta strand repeat containing protein n=3 Tax=Pseudomonas RepID=J2YS28_9PSED
conserved protein of unknown function; RTX toxins and related Ca2+-binding domain
Autotransporter-associated beta strand repeat containing protein {ECO:0000313|EMBL:EJM43738.1}; Flags: Precursor;; TaxID=1144326 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM24.;"
berkeley_reactor_200306_planktonic_scaffold_49371_10
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

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22243..22452
DNA (210bp) protein (70aa)
Transposase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJ08_9BACT
Transposase {ECO:0000313|EMBL:EDM26793.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
transposase IS204/IS1001/IS1096/IS1165 family protein
berkeley_reactor_200306_planktonic_scaffold_49371_11
unknown

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comp(22925..23065)
DNA (141bp) protein (47aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_49371_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23445..23687)
DNA (243bp) protein (81aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAH1_GEOUR
XRE family plasmid maintenance system antidote protein
Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:ABQ25420.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
berkeley_reactor_200306_planktonic_scaffold_49371_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23825..24115)
DNA (291bp) protein (97aa)
Histone family protein DNA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBS4_9BACT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EEF62959.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hupB; transcriptional dual regulator HU-beta
berkeley_reactor_200306_planktonic_scaffold_49371_14
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(24239..27292)
DNA (3054bp) protein (1018aa)
Uncharacterized protein n=1 Tax=Bacteroides oleiciplenus YIT 12058 RepID=K9EGK6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:GAO30308.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
laminin G domain-containing protein,fibronectin type III domain-containing protein
Displaying 14 items

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