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berkeley_reactor_200306_planktonic_scaffold_49371_9

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 14887..21663

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Autotransporter-associated beta strand repeat containing protein n=3 Tax=Pseudomonas RepID=J2YS28_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 28.0
  • Coverage: 2543.0
  • Bit_score: 486
  • Evalue 7.70e-134
conserved protein of unknown function; RTX toxins and related Ca2+-binding domain similarity KEGG
DB: KEGG
  • Identity: 28.1
  • Coverage: 2433.0
  • Bit_score: 517
  • Evalue 1.20e-143
Autotransporter-associated beta strand repeat containing protein {ECO:0000313|EMBL:EJM43738.1}; Flags: Precursor;; TaxID=1144326 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM24.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 28.0
  • Coverage: 2543.0
  • Bit_score: 486
  • Evalue 1.10e-133

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Taxonomy

Pseudomonas sp. GM24 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 6777
ATGAAAACACCACGACTCCTCGTTCAAACAAGCCCCCGCCTCACCGGCGTCCTGATCCTGTCGCTCGGCCTGCTGGCCGCCCGCGCCGCCGACCAAACTTGGACGGGTCAGGGCGACGACGCCAACTGGCAGACGCCCGGCAACTGGCTGGGCGGCACCCCGCCCGCCGCCGGGGATGCGCTGATCTTCACGCAAACCGCCGGCCTGCAAAACACCAACAATTTCGTGGCGGGCACCGAATTTGGCGGCTTGATCTTCCAGGCGCCGGCGGGCGGGTTTTCACTCAACGGCAAGGCCATCACGCTGAACGGTAACATCACCAACAACCAGGTGGTCACGGAACAAACCATCAATCTCTCCGTGGCGCTGGGCATGACGCCAACGGTGGACGTGGCGCCCGACGCGGCGCTGACGCTGAACGGCGTGCTGTCCGGCAGCCATGGCCTGACCAAGGTGGACGGCGGCGCGCTGACATTGAATGGCGCCAACACCTTTACCGGGGCGGTGACGGTGGATGGCGGCAAGGTCGCCGTCGGTTCCGATGCGAATCTCGGGGCGGCACCGGCCAGTGCGACGGCCGGGAAAATCATTTTGGACGGCGGCGCGCTGGACATCGTGAACGGCTTCACGCTCAACGCCAACCGCGGCATCGCGGTCGGGTCCGCTGCCGGCGGTTCCGGAACGATCACGGTTGAAACCGGGAAGACGTTGAATTACTCCGGGGTGATCGCCGACCATGGCGGAACGGGCGGTTTCACCAAGAACGGTTATGGCGGGCTGACGCTGGCCGGCCAGAACACCTACAGCGGCGCGACCTCGAACCGGGTCGGTGCGCTGACGCTGGATTTTTCGCAGGCCAGCTCGCCGGCAAACAACATCATTCCCGCCGGATCCGATTTGACCCTCGGCGGGGAAAATGCCGGCGCCGGCGCGCAAAACGAGGCGCAATTGAATGTTGTCGGCAAGGACAACACGGTCAATTCCCAATCGTTTCACAGCACCCACCTGACGTTTGCCGGATCCATTGTCCAGGCCGCAAGCGGCGCCGCTGGAACGATGAATTTGAATCTGGGAACCCTGAGCCACGACCCGGGCGCGGCCCTGCTGATGTTGCCGCCACAAAACAGCGGCGGCGCGGGCAATATTGAAACCACCTCGGGAAACATCAACGGATTGCTCGGCGGTTACGCGACCATCGGCGACGGGACGACCTACACCGCCAACGGTTACCAGGTGTATTACAGCACCAATTTTGCGGCGGTGGATGGCAGCGGCAACATTGTCAATTTTACCGGCTACTTCAACTGGTTGGGCGGCAATCTGCAGGGCCAGGTGACGGCAGCCTCCAACTTGCTGTTTGCGCCCAGCGCGCCGGCGGTGGTCACGGTGGACGACGCCAATGCCAACCGTCTCACAGAGGTCAACACGATCAATCTTTCGGCTCCTGACAGCGGCAGCACGGCAAATTATTACGGTATCTACATTGGCGACGGCAACACGCTGCGCCTGGGCAAATACGGCGGCATCCTGAAAACGGACCGGAGCCGCGATGTCATCACCATCGGGGGCGTGGACAACAGTGTGCAAGGCGGCAGCGGAACAAGCGGTTCGGCGAATATCGGCACGCTCACCGCCGGCGGCGCGGACAATACCGACGGGGAAATTGTGGTGACCGCCAACGGCCAGGACGAAAGCCACGGCACCACGATTTTCGAGTCCAAGATCACGGACAACGGAACCGGCAAGGTGGCGTTTGTAAAGATGGGGCCGGGCAGCATCAAGCTCGACGGCCACAACACCTTTTCCGGCGGCCTTTACCTGTTGCAGGGCCGCGTTCAATTTGCCGGACATGAAGTGGACAGCTCGGGAGCATCGGACAATCCCGACGCCGGCGGCACCGGTCCCATTTATATTCTGCCGGGCAGTTACCTTTTCCCCAGCGGCATCGGCAGCGGGGTGATCACGAACGACATCTATCTTGCCGGCAAGGGCACGGCGGCGGAACCCTTGGGCGCCATCCGGAGCGGCAATTTTTCCAGCACGATTCATTTGATCGGCAATGCGCAGTTGGGCGGTGGGACTTTCCTGGGCCCGATTGTCGGTGATTTTGACCTGGGCCTCTGCATGCCGGCGGTCACCCACGGGGACGTTCATCTGGCCAGCCCAAGCAACGGCTGGACCGGCGACACGATCATGAACGCCGAGGATCATTCGGGCACCATCGTCCAGCACGTTTACAACGAAACGAACGAGGTCATCCCCGATGGCTTCGGGAGGGGCAATGTCACCATGATGCCCGGCGGCGGCCGCTCGACCAGCTACATCGTCTGGGACTTGCAGGGTTACAACGAAACCATCAACGGCCTCGCCACCAGCGGTAATCACGTGGAGGATTGTCTGATCACCAACGGCGCCGCCGCGGGGGCCGACTCGGTTCTGACCGTCGGCAATAACGATCAATCCGGAACGTTCGCCGGTTTGATCACCGACGGCGGAACGGGTTCCGGGACGCTGGGACTGACGAAGATCGGCGGCGGGGTCGAAACCCTGACCGGCGTGAACACCTACAGCGGCGACACTGTTGTCAACGGCGGCACGCTGGCGTTGGCCGGTTCCGGTTCCATTGCGAACAGCGCCCACCTCGTCGTGCAAAGCAACGCGCTGCTGGATGTTTCCGGTGAATCCGCCTTCGCCTTTCCCAACACCGCCTCGCTGAACGACGGCAACCTCAAGGTCGGCACGGGAGCCAGCGTCGGCACGTTGAACCTGGCGGATTCGCGGCTGCGCATTTCAACCACTTCCGACGCGGGCAACCTCACGGCCAGCGCGCTGAATCTTTCGGGCGCCACCAATTACATTGACATCGTGTCGCTCGGATTGATCAACCAGTATCCGGTTCAATTCACCGTGCTGAAATACTCGGGCAGCCTGGGCGGTGCCTTCAACTTCGGCCTGGGCAATGTTCCCGGCACCGAAACCACCGGCTATGTTTCCAACAATGTGGCGAATTCCTCGATTGACGTGGTGCTGCTCACCGGGCCGTCCGTGCTCACCTGGACCGGCGGCAACGGCAATGCCTGGGATGTCGGCGCCACCACGAACTGGCTCGCCTTCGGCACCACGCCGTCCGCCTTCCACAATGTGGATTCGGTCATCTTTCCCGACGCGGCCAGCACCGGGACGGTCAGTGTCAATGATCCGGTCGTTCCCGGTTCGGTGCAGTTCTCGAACGACACCCTGGATTACACGCTCACCGGCGCGGAAGGCATCGGCGGCATGGCGAGCATGACCAAGGACGGCGCGGCGAAGCTGACCATTGACAATGGCAACAATACATTCTCCGGCGGCCTGACCATTAACAACGGCACGGTTCAGGTCGGCAACAACGACACGAGCGGCAATCTGCCGCCAACCGGCGGGGTTGAGAACGAAGGGGCGCTGGTTTTTGACCGGACGGATGCGCTGACGGTGAGCGCGCCCATATCCGGCGGCGGCTCGCTCATGCAGGACAGCACGGGCGTGCTCACCTTGAGCGGCAACAACACCTTCACCGGTCCGCTCACCGTCTCGCAGGGCACCGTGCAGGCCGGCAGCGACACGGCCTTGGGCACTGCGGACGGCAACACCACCGTGAATGGCGGGGCGACACTGGACGTCAACGGACACACGCTCAACACCGAACCGGTGATTGTCTCCGGCGCGGGCGTTGGCGGCGCAGGTGCGATTATCAATTCGGGAGCCCAGAGCCTGAACGCCATGGGCGATGTCACGCTGGCCGGCGACACGTCGTTCGGCGGCACCGGCCGCTGGGATATTCGCGGCGGCACGGCCCAACTGGTGACCTCGCCCTTTGGCAGCGCCTACACCGTGAACAAGGTGGGCACGAACTACGTTGCGTGGGTTGGAATTTATGTGGATACCGGCCTGGGCGACATCAACGTGCAGGGGGGCACGTTGAGCATTGAAACGAGCACGTCCGGATTGGGCGATCCCTCGCACACGCTCACGGTTTCCAGCGGCGCCACGTTGCAGTTCTACAACACCACGACGCCGTTCAGCAAACAATTCGTTCTCAACGGCGACGGCGCAACCACGACCTTGAATTGTTCCGCGGGAACCGCCAACAATGTCAGCGGCACTTTCACCCTGAACGGCAACTGCCTCTTCAACGCCGGCACGGGAGATTCACTCGCCTTGTCTGGAACGCTGGGCGGCTCCGGCAGCCTGACAAAGACGGGTGCGGGAACCAACATTCTGGCCAGCGGCTCCTCCGCCACCTACACCGGCGGCACGACGATCAGCAACGGAACGTTCCTGCTGGACGGCAGTCTCTCCGGAACCTTGGCGGTTGAAAATGGCGCCGCGCTGCGGGGCATCGGTTCCGCATCCGGCACGGTGACCGTCGCGGGTGGCAACGTGTCGCCGGGCGACGATTCCACGCCGCAAGGCACGCTGACGCTTGGCAGCCTGAATTTAAACGGTGGTTCCGCCGCCTTCGAACTTTCCGACACGCCCGCCGCGGGCAACGATCAAATCAGTTTGACGGGCGACTTGAGGCTGAATGGCGTCAGCACGTTGCAAATCACCCCGCTGGCGTTCATGAATGTGGGAGATGAATACACGTTGATCCAGTATGGCGGAGCCACGCTGCCCAGCAGCGCCACCAACAACCTGGTGGTCACCAGCACCCTGCCCGGCTTCGCCTTCTCGGTCGTGGATCCAGCCACCACGCCGAATGCCATCAAGATTCACGTGGACCAAGCGCAGGGAAATGATTTTTGGACCGGCGCCTCGTCATCCGTCTGGGATTTCTCGGCGGTCAACTGGACCCGGAGCGGCAATCCGGTTGCGTTCAACGACGGCGATTACGCGACATTTGACGATTCCTCGACGGTAACGAATGTCATGCTTTCCGGTGACATCAACCTTTCGGGCCTGACGGTGAGCAGCGGCGGGGAAGCCTATAACTTCGGCGGCACCGGCAGTTTGAGCGGCAAGGGCGGATTGCATTTGAGCGGCATCGGCCTCACCATCGCCAACACCGGAACCAACACCTTCGCCGGCCCCATTACGATTGACTATGGCACGCTGCAACTCGGCAATGGCGGCGCGGGCGGCTCAATCGGGGCCGGGGTTCTGACCAACATGGGCCTGGTCATTCTGGATCGCAGCGACGACGGACTCACCCTCAGCAACAACATCACCGGCTCGGGTTCCATTGCCAGCCAGGGAACCGGCACGGTGACGTTGACGGGAGCCAACACCTTCAGCGGTGAAGTGGATGTTCAACACGGAACCTTGAGGACGCTGAACAGCTCGGCCCTCGGGGACATATTCAGCGGCACCACGGTCAGCAACGGCGCCGCCCTGGACATTGGCGCCAACAACGTCAACCTGAGCAAGGAACCCATCACGGTTTCCGGCGCCGGACCGGATGGTTCCGGGGCAATCGTCAACAGCAGTGCCAGCACGGCGTTCGTGGGGGCGAACATCGGTCAAGTGACATTGACGGGCGACACGACGATCGGCGGCTCCGGCCGGCTCGACTATCGCGCCAGTTCGGCCACGGCCGATGACGTGGCGCTCTATTGTGGAGGCCAGCCCTACACCCTGACCAAGGCCGGCACCAACCTTCTCCAGATGGCCGGCGTGCAGATTGACCCGGGTTTGGGAGACATCAACATTGAAGCGGGCACACTCGGTTTCCAGTGGTATATGCCTTCGCTGGGCGATTCAAGCAAGCACCTGACCGTGTCCGACGGAGCCTCCCTGGCATTTTATGACATGTCCAACGCCGTCAGCAAAGTGCTGATTTTAAACAACGGGGCCAGCGTTCTCAGCCAGCACGGCGACAACGAATTCGACGGGCCGGTCACCCTGACGGGAACCAATACGATCAGCGTCACCAGCGGCACGCTGACTTTTGCCAACGCCATTGACGGCACGGGCGACTTGCTTAAAACCGGCGGCGCAACCTTGATCCTGTCCGGCGCGACCGAGACTTACACCGGCGGCACTTATGTGAATGGCGGCACGCTTGCCTTGATGGATCCGGTGGATCTCGCCAGCAGTCCGGCCATCGTTTTGGCCGGCGGCACCATTGACGTCAGCGGCCGTTCCGACGGCACCCTGCCCCTGGGCAGTTCCACGGCACAATGGCTCGCGGGCGGGGGAAACATAACCGGCAATCTCAACGAAAATTCCGGTTCCACCGTCAACCCGGGCAACAACACCGGCACGGCCACCTTGAACGTGTCCGGCACCGCCGCTCTGAACGGCTTCATCCTGCTGGATCTCAACCGCACCAACCTGCAGACCAGTGATGAAATCACGGCGGCCAGTTTCACCACTGGCGGCATTCTAACGGTCACCAACCTCGGGCCCGACCTGGTCACCAACGACAAATTCCAGTTGTTCAGCTCGGCGGTGTCGGGTTTTGCCACAGTCAATCTGCCGGCCAAAAATTCGACGGGCACCGTCACCTACCAATGGCAGAACGACCTCGGAAAAGACGGTTCCATCACCTTGTTGAGCGGCGGCAACGGTGTGAATACCACGCCAACCAACATTGTGTTCTCCGTCAGCGGCGGCAACCTCACAATCAGTTGGCCGGCGGATCACCTTGGCTGGACGTTGCAAACGCAAACCAATTCGCTTGGTTCCGGCCTCGGCGACAACTGGGTGGACGTCCCGGGCTCCACAACGACAACGAGCCTGGTTGTTCCCATCAACCCGGACAATGGATCCGTATTCTTCCGGATGAAATATCAACCGTAA
PROTEIN sequence
Length: 2259
MKTPRLLVQTSPRLTGVLILSLGLLAARAADQTWTGQGDDANWQTPGNWLGGTPPAAGDALIFTQTAGLQNTNNFVAGTEFGGLIFQAPAGGFSLNGKAITLNGNITNNQVVTEQTINLSVALGMTPTVDVAPDAALTLNGVLSGSHGLTKVDGGALTLNGANTFTGAVTVDGGKVAVGSDANLGAAPASATAGKIILDGGALDIVNGFTLNANRGIAVGSAAGGSGTITVETGKTLNYSGVIADHGGTGGFTKNGYGGLTLAGQNTYSGATSNRVGALTLDFSQASSPANNIIPAGSDLTLGGENAGAGAQNEAQLNVVGKDNTVNSQSFHSTHLTFAGSIVQAASGAAGTMNLNLGTLSHDPGAALLMLPPQNSGGAGNIETTSGNINGLLGGYATIGDGTTYTANGYQVYYSTNFAAVDGSGNIVNFTGYFNWLGGNLQGQVTAASNLLFAPSAPAVVTVDDANANRLTEVNTINLSAPDSGSTANYYGIYIGDGNTLRLGKYGGILKTDRSRDVITIGGVDNSVQGGSGTSGSANIGTLTAGGADNTDGEIVVTANGQDESHGTTIFESKITDNGTGKVAFVKMGPGSIKLDGHNTFSGGLYLLQGRVQFAGHEVDSSGASDNPDAGGTGPIYILPGSYLFPSGIGSGVITNDIYLAGKGTAAEPLGAIRSGNFSSTIHLIGNAQLGGGTFLGPIVGDFDLGLCMPAVTHGDVHLASPSNGWTGDTIMNAEDHSGTIVQHVYNETNEVIPDGFGRGNVTMMPGGGRSTSYIVWDLQGYNETINGLATSGNHVEDCLITNGAAAGADSVLTVGNNDQSGTFAGLITDGGTGSGTLGLTKIGGGVETLTGVNTYSGDTVVNGGTLALAGSGSIANSAHLVVQSNALLDVSGESAFAFPNTASLNDGNLKVGTGASVGTLNLADSRLRISTTSDAGNLTASALNLSGATNYIDIVSLGLINQYPVQFTVLKYSGSLGGAFNFGLGNVPGTETTGYVSNNVANSSIDVVLLTGPSVLTWTGGNGNAWDVGATTNWLAFGTTPSAFHNVDSVIFPDAASTGTVSVNDPVVPGSVQFSNDTLDYTLTGAEGIGGMASMTKDGAAKLTIDNGNNTFSGGLTINNGTVQVGNNDTSGNLPPTGGVENEGALVFDRTDALTVSAPISGGGSLMQDSTGVLTLSGNNTFTGPLTVSQGTVQAGSDTALGTADGNTTVNGGATLDVNGHTLNTEPVIVSGAGVGGAGAIINSGAQSLNAMGDVTLAGDTSFGGTGRWDIRGGTAQLVTSPFGSAYTVNKVGTNYVAWVGIYVDTGLGDINVQGGTLSIETSTSGLGDPSHTLTVSSGATLQFYNTTTPFSKQFVLNGDGATTTLNCSAGTANNVSGTFTLNGNCLFNAGTGDSLALSGTLGGSGSLTKTGAGTNILASGSSATYTGGTTISNGTFLLDGSLSGTLAVENGAALRGIGSASGTVTVAGGNVSPGDDSTPQGTLTLGSLNLNGGSAAFELSDTPAAGNDQISLTGDLRLNGVSTLQITPLAFMNVGDEYTLIQYGGATLPSSATNNLVVTSTLPGFAFSVVDPATTPNAIKIHVDQAQGNDFWTGASSSVWDFSAVNWTRSGNPVAFNDGDYATFDDSSTVTNVMLSGDINLSGLTVSSGGEAYNFGGTGSLSGKGGLHLSGIGLTIANTGTNTFAGPITIDYGTLQLGNGGAGGSIGAGVLTNMGLVILDRSDDGLTLSNNITGSGSIASQGTGTVTLTGANTFSGEVDVQHGTLRTLNSSALGDIFSGTTVSNGAALDIGANNVNLSKEPITVSGAGPDGSGAIVNSSASTAFVGANIGQVTLTGDTTIGGSGRLDYRASSATADDVALYCGGQPYTLTKAGTNLLQMAGVQIDPGLGDINIEAGTLGFQWYMPSLGDSSKHLTVSDGASLAFYDMSNAVSKVLILNNGASVLSQHGDNEFDGPVTLTGTNTISVTSGTLTFANAIDGTGDLLKTGGATLILSGATETYTGGTYVNGGTLALMDPVDLASSPAIVLAGGTIDVSGRSDGTLPLGSSTAQWLAGGGNITGNLNENSGSTVNPGNNTGTATLNVSGTAALNGFILLDLNRTNLQTSDEITAASFTTGGILTVTNLGPDLVTNDKFQLFSSAVSGFATVNLPAKNSTGTVTYQWQNDLGKDGSITLLSGGNGVNTTPTNIVFSVSGGNLTISWPADHLGWTLQTQTNSLGSGLGDNWVDVPGSTTTTSLVVPINPDNGSVFFRMKYQP*