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berkeley_reactor_200306_planktonic_scaffold_58787_132

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 176041..177111

Top 3 Functional Annotations

Value Algorithm Source
Type IV pilus assembly protein PilM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV3_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 55.9
  • Coverage: 356.0
  • Bit_score: 405
  • Evalue 4.70e-110
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EEF62421.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.9
  • Coverage: 356.0
  • Bit_score: 405
  • Evalue 6.50e-110
type IV pilus assembly protein PilM similarity KEGG
DB: KEGG
  • Identity: 26.9
  • Coverage: 361.0
  • Bit_score: 123
  • Evalue 7.70e-26

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1071
ATGGCTTTCAATCTGCCATTTCTATCCGGGGCCTCGAAGAAAAAGCGTTCCCAAATGATCTCCCTTGACCTGGGCAGCCGGACCACCAAGGCGGTGCTGCTGGAACGGCGGGGGGAGAAACTGGCGTTGACGCGCTACGCGGTGCTGGATGCGCCGATTTATGACCGCAAGATTTCGGTCGAACAGCTCGCGGATCATTTGAATTCGGTGGCGGAGGCGCTGGGCCGGAGCACCAAATACATCGCGGTGGCCGTCGGCCTGAACGATGCCGTGGTGCGGCTCATTGAGATGCCGCCCCTGCCGCTTGATGAGATGCGGTCCATCCTGAAGATGAACCACAAAAGCTATCTGCAGCAGGATTTGCCGAACCACACCTTTGACTGCTACATCATTCCGCAGAATGCCCGGGCGGGCGCCGACAAACCCGCGGCTTCCGCAAAATTGAAGGTTCTGGCCGCCGCGGCCAAAAAGCAGCTCGTCGCCGACCTCATGCAATCCGCCAGTTCGGCGGGGCTGGCGGCGGACATGATGATTCCCTCGCTGGTGGGCCCGATCAACGCCTTTGAAAGCGCGCAGCCGGAGATTTACGCGAAGGAAACCGTCGCGCTGGTGGACGTGGGCTTCAAAAGCACCTCGGTTTGTGTGCTCGACCGCGGTGAATTGAGCACCAACCGCGTGGTCAACATCGGCGGCGACCAGTTGACGACCGGCCTGGCGGAAACCATGAGCATCAGCTACGCCGAGGCGGAAGGCATCAAGGTGGGCATGGCTCCCGAGGTCGAGTCCGCCCTGCAGATGCAGGTGTTTCCGTTGGGCCGCGAAATCCGGGCCTCCCTCGACTTTTTTGAACACCAGCAGGATCGTCCGGTGACCCAGGTGTTTGTCAGCGGCGCGTCGGCCCGCTCAGAAATGATCATCCAGATGTTGCATTCGGAATTGATGGTGGAATGCAAAACCTGGAGTCCCACGGGAACCATGCTCGTGGATTTAACCGGACAGCAGCTGGCGGAGTTTGATCATGTCGGATCGCAATTGACGGTGGCCATTGGCACCGGACTGGCGGCTTACTGA
PROTEIN sequence
Length: 357
MAFNLPFLSGASKKKRSQMISLDLGSRTTKAVLLERRGEKLALTRYAVLDAPIYDRKISVEQLADHLNSVAEALGRSTKYIAVAVGLNDAVVRLIEMPPLPLDEMRSILKMNHKSYLQQDLPNHTFDCYIIPQNARAGADKPAASAKLKVLAAAAKKQLVADLMQSASSAGLAADMMIPSLVGPINAFESAQPEIYAKETVALVDVGFKSTSVCVLDRGELSTNRVVNIGGDQLTTGLAETMSISYAEAEGIKVGMAPEVESALQMQVFPLGREIRASLDFFEHQQDRPVTQVFVSGASARSEMIIQMLHSELMVECKTWSPTGTMLVDLTGQQLAEFDHVGSQLTVAIGTGLAAY*