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berkeley_reactor_200306_planktonic_scaffold_58787

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Displaying items 121-150 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_58787_119
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

152590..153666
DNA (1077bp) protein (359aa)
Shikimate/quinate 5-dehydrogenase id=3744808 bin=GWF2_Lentisphaerae_57_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
glutamyl-tRNA reductase
Tax=GWF2_Lentisphaerae_57_35_curated
berkeley_reactor_200306_planktonic_scaffold_58787_120
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

153718..155964
DNA (2247bp) protein (749aa)
Cytochrome c554 n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZTB0_MELRP
Cytochrome c554
Cytochrome c554 {ECO:0000313|EMBL:AFN75279.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
berkeley_reactor_200306_planktonic_scaffold_58787_121

Not on your lists

156195..157586
DNA (1392bp) protein (464aa)
Transposase n=1 Tax=sediment metagenome RepID=D9PJI0_9ZZZZ
Transposase {ECO:0000313|EMBL:EFK96287.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
transposase family protein
berkeley_reactor_200306_planktonic_scaffold_58787_122
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(157577..160330)
DNA (2754bp) protein (918aa)
Glycosyl hydrolases related to GH101 family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EXX9_9BACT
Glycosyl hydrolases related to GH101 family
Glycosyl hydrolases related to GH101 family {ECO:0000313|EMBL:CCW36559.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
berkeley_reactor_200306_planktonic_scaffold_58787_123
Pseudomonas sp. HMP271, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(160482..161360)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI0003743995
Uncharacterized protein {ECO:0000313|EMBL:KGK84559.1}; TaxID=1487922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HMP271.;"
CHAD domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_58787_124
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

161488..162831
DNA (1344bp) protein (448aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glutamate--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ13_9BACT
glnS; glutamyl-or glutaminyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_58787_125
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(162934..166368)
DNA (3435bp) protein (1145aa)
AMP-dependent synthetase and ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ98_KORVE
2-acylglycerophosphoethanolamine acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
berkeley_reactor_200306_planktonic_scaffold_58787_126
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(166444..170886)
DNA (4443bp) protein (1481aa)
Putative CoA-substrate-specific enzyme activase id=3979761 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative CoA-substrate-specific enzyme activase
Tax=GWC2_Rokubacteria_70_16_curated
berkeley_reactor_200306_planktonic_scaffold_58787_127
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(171039..172229)
DNA (1191bp) protein (397aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Frankia sp. EUN1f RepID=D3D1M3_9ACTO
Endonuclease/Exonuclease/phosphatase family protein {ECO:0000313|EMBL:GAO03361.1}; Flags: Precursor;; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
endonuclease/exonuclease/phosphatase
berkeley_reactor_200306_planktonic_scaffold_58787_128

Not on your lists

comp(172322..172921)
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UNW8_9FLAO id=124915 bin=ACD79 species=Flavobacteriales bacterium ALC-1 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Uncharacterized protein {ECO:0000313|EMBL:EKD25910.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
berkeley_reactor_200306_planktonic_scaffold_58787_129
RLO_WOR_2_51_8, WOR-2, Bacteria

Not on your lists

comp(172978..174339)
DNA (1362bp) protein (454aa)
radical SAM protein id=14628515 bin=bin8_Chloro species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin8_Chloro organism_group=Chloroflexi
Radical SAM domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_8_curated
berkeley_reactor_200306_planktonic_scaffold_58787_130
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(174336..174863)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWI7_9BACT
hypothetical protein
Tax=RBG_16_Zixibacteria_50_21_curated
berkeley_reactor_200306_planktonic_scaffold_58787_131
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

175004..175876
DNA (873bp) protein (291aa)
Transcriptional regulator, LysR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV2_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF62420.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_58787_132
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

176041..177111
DNA (1071bp) protein (357aa)
Type IV pilus assembly protein PilM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV3_9BACT
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EEF62421.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type IV pilus assembly protein PilM
berkeley_reactor_200306_planktonic_scaffold_58787_133
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

177120..177788
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62422.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_58787_134
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

177785..178357
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62423.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_58787_135
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

178362..178814
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62424.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_58787_136
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

178918..180831
DNA (1914bp) protein (638aa)
Type II and III secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV8_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:EEF62426.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type II and III secretion system protein
berkeley_reactor_200306_planktonic_scaffold_58787_137
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

180844..185070
DNA (4227bp) protein (1409aa)
1, 4-beta cellobiohydrolase n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0IFA4_9BACL
Putative lytic polysaccharide monooxygenase {ECO:0000313|EMBL:AIY28331.1}; TaxID=59840 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus curdlanolyticus.;"
Chitinase
berkeley_reactor_200306_planktonic_scaffold_58787_138
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(185127..185429)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBV9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62427.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_139
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(185429..185875)
DNA (447bp) protein (149aa)
Iron (Metal) dependent repressor, DtxR family n=2 Tax=unclassified Opitutaceae RepID=H1J042_9BACT
Mn-dependent transcriptional regulator
Mn-dependent transcriptional regulator {ECO:0000313|EMBL:EIP99230.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_58787_140
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

185989..187392
DNA (1404bp) protein (468aa)
Divalent metal cation transporter MntH n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTL7_9BACT
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Manganese transport protein mntH
berkeley_reactor_200306_planktonic_scaffold_58787_141
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

187394..187819
DNA (426bp) protein (142aa)
Universal stress protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTL6_9BACT
UspA domain protein {ECO:0000313|EMBL:EDY21890.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
UspA domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_58787_142
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(188080..189153)
DNA (1074bp) protein (358aa)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Putative ATP:guanido phosphotransferase Cflav_PD0268 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRW4_9BACT
Arginine kinase
berkeley_reactor_200306_planktonic_scaffold_58787_143
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(189150..189659)
DNA (510bp) protein (170aa)
UvrB/UvrC protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRW5_9BACT
UvrB/UvrC protein {ECO:0000313|EMBL:EEF57424.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
mcsA; Modulator of heat shock repressor CtsR, McsA
berkeley_reactor_200306_planktonic_scaffold_58787_144
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(189664..190536)
DNA (873bp) protein (291aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EEF57425.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EEF57425.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRW6_9BACT
berkeley_reactor_200306_planktonic_scaffold_58787_trna_2
unknown

Not on your lists

190634..190705
DNA (72bp)
transferRNA Glu
berkeley_reactor_200306_planktonic_scaffold_58787_145
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

191027..193267
DNA (2241bp) protein (747aa)
Trehalose-phosphatase {ECO:0000313|EMBL:KCZ71868.1}; EC=2.4.1.15 {ECO:0000313|EMBL:KCZ71868.1};; EC=3.1.3.12 {ECO:0000313|EMBL:KCZ71868.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcriptional antiterminator n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B65579
UDP-forming alpha,alpha-trehalose-phosphate synthase
berkeley_reactor_200306_planktonic_scaffold_58787_146
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

193273..196686
DNA (3414bp) protein (1138aa)
Trehalose synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNC6_9BACT
Trehalose synthase {ECO:0000313|EMBL:EEF58679.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alpha amylase, catalytic subdomain
berkeley_reactor_200306_planktonic_scaffold_58787_147
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196709..198130
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9C5_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN33870.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Displaying items 121-150 of 153 in total

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