name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_planktonic_scaffold_58787_1
unknown
|
Not on your lists |
2..238
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_58787_2
unknown
|
Not on your lists |
comp(309..494)
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_58787_3
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1067..1498
|
Transcriptional regulator n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U1ZVI4_9PSED
Transcriptional regulator {ECO:0000313|EMBL:ERI51113.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
OmpR; response regulator
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_4
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria
|
Not on your lists |
comp(1527..3392)
|
two-component hybrid sensor and regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744DAD
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:AFY34014.1}; Flags: Precursor;; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_5
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3536..4429)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D264_9BACT
PAS/PAC sensor signal transduction histidine kinase
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_6
unknown
|
Not on your lists |
4849..4989
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_58787_7
unknown
|
Not on your lists |
4993..5712
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_58787_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
5709..7184
|
Multi-sensor hybrid histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE83_9BACT
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EEF61974.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
multi-sensor hybrid histidine kinase
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(7753..10143)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Multi-sensor hybrid histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB4_9BACT
two-component hybrid sensor and regulator
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_10
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10191..10787)
|
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39V25_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB31899.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(10799..12766)
|
TonB-dependent receptor plug n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB6_9BACT
TonB-dependent receptor plug {ECO:0000313|EMBL:EEF60377.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ligand-gated TonB-dependent outer membrane channel
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_12
Shewanella putrefaciens, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13284..14117)
|
MORN variant repeat protein n=1 Tax=Shewanella putrefaciens (strain 200) RepID=E6XHX4_SHEP2
MORN variant repeat protein
MORN variant repeat protein {ECO:0000313|EMBL:ADV53018.1}; TaxID=399804 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella putrefaciens (strain 200).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_13
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria
|
Not on your lists |
comp(14815..15372)
|
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JKM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS34745.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_14
Bacteroides salanitronis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria
|
Not on your lists |
comp(15427..15849)
|
hypothetical protein n=1 Tax=Bacteroides barnesiae RepID=UPI00037E6461
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY35630.1}; TaxID=667015 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_15
unknown
|
Not on your lists |
comp(16097..16585)
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_58787_16
GWA2_OP3_50_21_curated, Omnitrophica, Bacteria
|
Not on your lists |
comp(16594..23013)
|
YD repeat protein id=4699335 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
NHL/RHS/YD repeat-containing protein
Tax=GWA2_OP3_50_21_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(23044..24360)
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPB8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58258.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_18
Mesotoga prima, Mesotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria
|
Not on your lists |
comp(24924..25310)
|
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI0003797AB8
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AFK06107.1}; TaxID=660470 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga.;" source="Mesotoga prima MesG1.Ag.4.2.;"
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_19
R_Nitrospinae_39_10, Nitrospinae, Bacteria
|
Not on your lists |
25474..25668
|
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
helix-turn-helix DNA-binding protein, XRE family
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
25836..26087
|
Transcriptional regulator, XRE family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI06_9BACT
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EEF60499.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
XRE family transcriptional regulator
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_21
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria
|
Not on your lists |
26352..27026
|
Two component transcriptional regulator, LuxR family id=2786760 bin=GWF2_Melioribacter_38_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
LuxR family transcriptional regulator
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_22
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria
|
Not on your lists |
27259..29577
|
MAM domain protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZDI2_9BACT
MAM domain protein {ECO:0000313|EMBL:EAY31721.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
peptidase S8
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_23 |
Not on your lists |
29589..32681
|
hypothetical protein n=1 Tax=Moritella dasanensis RepID=UPI00037A78BC
Uncharacterized protein {ECO:0000313|EMBL:KKM75540.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
WD40 domain-containing protein
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_24
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33275..33829
|
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000360CE37
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAC46003.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
33826..34389
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHR6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60644.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
34872..35162
|
Histone family protein DNA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBS4_9BACT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EEF62959.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hupB; transcriptional dual regulator HU-beta
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_27
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
35390..38254
|
SNF2-related protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZIX3_9PROT
SNF2-like protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_28
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
38258..40090
|
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQ11_RHOCS
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_58787_29
unknown
|
Not on your lists |
40080..40577
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_58787_30
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
40583..42226
|
Adenine specific DNA methylase Mod n=1 Tax=Methylomicrobium album BG8 RepID=H8GQQ5_METAL
DNA methylase N-4 {ECO:0000313|EMBL:KFN37738.1}; TaxID=1538640 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. F21.;"
DNA methylase N-4/N-6 domain-containing protein
|