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berkeley_reactor_200306_planktonic_scaffold_58787_19

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 25474..25668

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 52.5
  • Coverage: 61.0
  • Bit_score: 64
  • Evalue 2.70e-08
helix-turn-helix DNA-binding protein, XRE family similarity KEGG
DB: KEGG
  • Identity: 54.4
  • Coverage: 57.0
  • Bit_score: 61
  • Evalue 6.40e-08
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 56.7
  • Coverage: 60.0
  • Bit_score: 68
  • Evalue 3.40e-09

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Taxonomy

R_Nitrospinae_39_10 → Nitrospinae → Bacteria

Sequences

DNA sequence
Length: 195
ATGGTCGGCCAGCAAATCCGCCACTACCGCAAACAGGCTCGATTGAGCCAGGAGCAATTAGCGGAGAAATCCGATTTAACCTACAAATACGTCGGCGAGGTTGAACGAGGAACTGTAAACATTTCGTTGGATTCATTAATGCGAATTGCCAAGGCCCTGAAAGTAAAACTGCACATCTTGATTGGCGAGCTTTGA
PROTEIN sequence
Length: 65
MVGQQIRHYRKQARLSQEQLAEKSDLTYKYVGEVERGTVNISLDSLMRIAKALKVKLHILIGEL*