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berkeley_reactor_200306_planktonic_scaffold_58787

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Displaying items 91-120 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_58787_90
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

113186..113884
DNA (699bp) protein (233aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRV5_9BACT
uroporphyrin-III C/tetrapyrrole methyltransferase
berkeley_reactor_200306_planktonic_scaffold_58787_91
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(114129..115010)
DNA (882bp) protein (294aa)
Hydrolase, TatD family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP70_9BACT
Hydrolase, TatD family {ECO:0000313|EMBL:EEF58321.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tatD; Mg-dependent DNase
berkeley_reactor_200306_planktonic_scaffold_58787_92
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(115017..116576)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP68_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58319.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_93
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

comp(116663..117469)
DNA (807bp) protein (269aa)
endoglucanase H (EC:3.2.1.4)
Glycoside hydrolase family 5 n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZM2_DICTD
Glycoside hydrolase family 5 {ECO:0000313|EMBL:ACK41955.1}; TaxID=515635 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus turgidum (strain Z-1310 / DSM 6724).;"
berkeley_reactor_200306_planktonic_scaffold_58787_94
unknown

Not on your lists

comp(117477..117824)
DNA (348bp) protein (116aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_95
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(117896..118687)
DNA (792bp) protein (264aa)
Beta-lactamase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP67_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:EEF58318.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phnP; Metal-dependent hydrolase of the beta-lactamase superfamily
berkeley_reactor_200306_planktonic_scaffold_58787_96
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

118832..120559
DNA (1728bp) protein (576aa)
DNA repair protein RecN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP66_9BACT
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA recombination protein RecN
berkeley_reactor_200306_planktonic_scaffold_58787_97
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120869..121075
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002EE3CF9
hypothetical protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
berkeley_reactor_200306_planktonic_scaffold_58787_98
Bacteriovorax sp. BAL6_X, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121081..121656
DNA (576bp) protein (192aa)
Fe-S type hydro-lyase tartrate/fumarate alpha and beta region (EC:4.2.1.32)
Fumarate hydratase I, C-terminal domain, beta subunit n=1 Tax=Bacteriovorax sp. BAL6_X RepID=T0CE81_9DELT
Fumarate hydratase I, C-terminal domain, beta subunit {ECO:0000313|EMBL:EPZ51149.1}; TaxID=1201290 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp. BAL6_X.;"
berkeley_reactor_200306_planktonic_scaffold_58787_99
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(121721..122482)
DNA (762bp) protein (254aa)
Biotin/lipoate A/B protein ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMW6_9BACT
Biotin/lipoate A/B protein ligase {ECO:0000313|EMBL:EEF58762.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
biotin/lipoate A/B protein ligase
berkeley_reactor_200306_planktonic_scaffold_58787_100
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

122563..125259
DNA (2697bp) protein (899aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pyruvate dehydrogenase E1 component n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMW5_9BACT
aceE; pyruvate dehydrogenase E1 component
berkeley_reactor_200306_planktonic_scaffold_58787_trna_1
unknown

Not on your lists

125340..125412
DNA (73bp)
transferRNA Phe
berkeley_reactor_200306_planktonic_scaffold_58787_101
R_OD1_Wolfebacteria_47_17b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

125847..126176
DNA (330bp) protein (110aa)
Cytochrome c class I n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZK3_OPITP
cytochrome c class I
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_47_17b_curated
berkeley_reactor_200306_planktonic_scaffold_58787_102
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

126316..127788
DNA (1473bp) protein (491aa)
Cytochrome c family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTY4_OPITP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_58787_103
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

128042..128578
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRK9_ACCPU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
berkeley_reactor_200306_planktonic_scaffold_58787_104
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

128575..128859
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDB8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62064.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_105
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

128974..130407
DNA (1434bp) protein (478aa)
Extradiol ring-cleavage dioxygenase class III protein subunit B n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRC4_OPITP
hypothetical protein
Extradiol ring-cleavage dioxygenase class III protein subunit B {ECO:0000313|EMBL:ACB74611.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_106
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

130505..131587
DNA (1083bp) protein (361aa)
Radical SAM domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRC3_OPITP
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ACB74610.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_107
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(131691..133058)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGI8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61039.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_108
unknown

Not on your lists

comp(133256..133615)
DNA (360bp) protein (120aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_109
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

134207..135691
DNA (1485bp) protein (495aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZT07_OPITP
peptidase S8/S53 subtilisin kexin sedolisin
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ACB75796.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_110
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

135812..136813
DNA (1002bp) protein (334aa)
Uncharacterized protein id=2989004 bin=GWF2_Planctomycete_41_51 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
hypothetical protein
Tax=RBG_13_Planctomycetes_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_58787_111
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(136865..139180)
DNA (2316bp) protein (772aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S6X0_9CYAN
Sensor histidine kinase {ECO:0000313|EMBL:EKF06256.1}; TaxID=1188 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
multi-sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_58787_112
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(139205..139642)
DNA (438bp) protein (146aa)
Response regulator receiver protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G211_9CYAN
Response regulator receiver protein {ECO:0000313|EMBL:CBN56651.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_58787_113
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(139647..141086)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
Phytochrome, two-component sensor histidine kinase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JWC4_9BACT
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_58787_114
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141089..141688)
DNA (600bp) protein (200aa)
Uncharacterized protein id=4819230 bin=GWC2_Syntrophus__56_31 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
berkeley_reactor_200306_planktonic_scaffold_58787_115
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141676..143727)
DNA (2052bp) protein (684aa)
TonB-dependent receptor, plug n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AR2_POLSJ
TonB-dependent receptor, plug
TonB-dependent receptor, plug {ECO:0000313|EMBL:ABE44380.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
berkeley_reactor_200306_planktonic_scaffold_58787_116
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

144643..146775
DNA (2133bp) protein (711aa)
Cytochrome b subunit of formate dehydrogenase-like protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZU02_OPITP
cytochrome b subunit of formate dehydrogenase-like protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_58787_117
Candidatus Magnetobacterium bavaricum, Candidatus Magnetobacterium, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

147371..150430
DNA (3060bp) protein (1020aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003612CEB
Cell wall/surface repeat protein {ECO:0000313|EMBL:KJU85670.1}; TaxID=29290 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium.;" source="Candidatus Magnetobacterium bavaricum.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_118
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

150724..152451
DNA (1728bp) protein (576aa)
Cytochrome b subunit of formate dehydrogenase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NYI2_9BACT
Formate dehydrogenase-like protein cytochrome b subunit
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
Displaying items 91-120 of 153 in total

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