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berkeley_reactor_200306_planktonic_scaffold_58787

Search features with annotation key words

Displaying items 31-60 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_58787_31
unknown

Not on your lists

42252..42410
DNA (159bp) protein (53aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_32
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

Not on your lists

42407..43312
DNA (906bp) protein (302aa)
Abi family protein id=2940110 bin=GWC2_Planctomycetes_45_44 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Abi family protein
Tax=RBG_13_Spirochaetes_51_14_curated
berkeley_reactor_200306_planktonic_scaffold_58787_33
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43309..46005
DNA (2697bp) protein (899aa)
Type III restriction enzyme, res subunit, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQ08_RHOCS
Type III restriction enzyme, res subunit, putative {ECO:0000313|EMBL:ACI97544.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
type III restriction enzyme, res subunit
berkeley_reactor_200306_planktonic_scaffold_58787_34
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

46109..47539
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Methylobacter sp. UW 659-2-H10 RepID=UPI00035FDFFA
Uncharacterized protein {ECO:0000313|EMBL:KKG83066.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
TIR protein
berkeley_reactor_200306_planktonic_scaffold_58787_35
RIFOXYA2_FULL_WWE3_46_9_curated, WWE3, Bacteria

Not on your lists

47478..49148
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W052_9BRAD
hypothetical protein
Tax=RIFOXYA2_FULL_WWE3_46_9_curated
berkeley_reactor_200306_planktonic_scaffold_58787_36
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(49292..50749)
DNA (1458bp) protein (486aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMP5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94679.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_58787_37
unknown

Not on your lists

comp(50746..51084)
DNA (339bp) protein (113aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_38
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51081..51782)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Anabaena variabilis (strain ATCC 29413 / PCC 7937) RepID=Q3M2P0_ANAVT
Mobilization protein MobD
Tax=CG_Rhodof_04
berkeley_reactor_200306_planktonic_scaffold_58787_39
unknown

Not on your lists

comp(52431..52940)
DNA (510bp) protein (170aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_40
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

53026..55824
DNA (2799bp) protein (933aa)
Conjugative relaxase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY28_OPITP
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:ACB75227.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_41
unknown

Not on your lists

55805..56155
DNA (351bp) protein (117aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_trna_3
unknown

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comp(56665..56738)
DNA (74bp)
transferRNA Met
berkeley_reactor_200306_planktonic_scaffold_58787_42
Brucella ceti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56786..57334)
DNA (549bp) protein (183aa)
Bme2 n=2 Tax=Brucella RepID=C9V656_BRUNE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEH13762.1}; TaxID=595497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ceti str. Cudo.;"
berkeley_reactor_200306_planktonic_scaffold_58787_43
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

57918..59699
DNA (1782bp) protein (594aa)
General substrate transporter n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXS0_OPITP
general substrate transporter
General substrate transporter {ECO:0000313|EMBL:ACB74292.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_44
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

59713..62250
DNA (2538bp) protein (846aa)
alpha-N-acetylglucosaminidase (EC:3.2.1.50)
Alpha-N-acetylglucosaminidase {ECO:0000313|EMBL:ADQ79634.1}; EC=3.2.1.50 {ECO:0000313|EMBL:ADQ79634.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
alpha-N-acetylglucosaminidase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B65715
berkeley_reactor_200306_planktonic_scaffold_58787_45
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

62254..63696
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000363DCDE
putative glycosyl hydrolase
Tax=GWF2_Bacteroidetes_49_14_curated
berkeley_reactor_200306_planktonic_scaffold_58787_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

63701..65704
DNA (2004bp) protein (668aa)
Beta-N-acetylhexosaminidase {ECO:0000313|EMBL:EEF62885.1}; EC=3.2.1.52 {ECO:0000313|EMBL:EEF62885.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Beta-N-acetylhexosaminidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBK0_9BACT
Beta-N-acetylhexosaminidase
berkeley_reactor_200306_planktonic_scaffold_58787_47
bacterium UASB14, Bacteria

Not on your lists

65701..67068
DNA (1368bp) protein (456aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK54124.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
hypothetical protein id=24528966 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_48
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

67073..67930
DNA (858bp) protein (286aa)
LmbE family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7X1_9BACT
LmbE family protein {ECO:0000313|EMBL:EDY17494.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative LmbE-like protein
berkeley_reactor_200306_planktonic_scaffold_58787_49
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

67934..68704
DNA (771bp) protein (257aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000361E01F
glucosamine-6-phosphate isomerase
berkeley_reactor_200306_planktonic_scaffold_58787_50
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(68758..69390)
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY58_OPITP
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACB76207.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_51
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(69412..71505)
DNA (2094bp) protein (698aa)
Histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY62_OPITP
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ACB76208.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_52
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71791..75588
DNA (3798bp) protein (1266aa)
Autotransporter-associated beta strand n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7V4E7_STEMA
Autotransporter-associated beta strand {ECO:0000313|EMBL:EZP43719.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
autotransporter protein
berkeley_reactor_200306_planktonic_scaffold_58787_53
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(75678..76607)
DNA (930bp) protein (310aa)
Transcriptional regulator, LysR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7K8_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDY17625.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_58787_54
unknown

Not on your lists

76821..78113
DNA (1293bp) protein (431aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_55
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

78161..79450
DNA (1290bp) protein (430aa)
Twin-arginine translocation pathway signal n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6U5_9BACT
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EDY17896.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_58787_56
unknown

Not on your lists

79563..79811
DNA (249bp) protein (83aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_58787_57
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

79811..81568
DNA (1758bp) protein (586aa)
Urea ABC transporter, permease protein UrtB n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP12_OPITP
urea ABC transporter permease UrtB
Urea ABC transporter, permease protein UrtB {ECO:0000313|EMBL:ACB77501.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_58
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

81581..82747
DNA (1167bp) protein (389aa)
Urea ABC transporter, permease protein UrtC n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP11_OPITP
urea ABC transporter permease UrtC
Urea ABC transporter, permease protein UrtC {ECO:0000313|EMBL:ACB77500.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_58787_59
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

82744..83505
DNA (762bp) protein (254aa)
Urea ABC transporter, ATP-binding protein UrtD n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6U2_9BACT
Urea ABC transporter, ATP-binding protein UrtD {ECO:0000313|EMBL:EDY17893.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
urea ABC transporter ATP-binding protein UrtD
Displaying items 31-60 of 153 in total

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