ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_78559_14

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 15612..16772

Top 3 Functional Annotations

Value Algorithm Source
Membrane protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AMP8_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 44.3
  • Coverage: 397.0
  • Bit_score: 250
  • Evalue 1.60e-63
Membrane protein {ECO:0000313|EMBL:GAD56013.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.3
  • Coverage: 397.0
  • Bit_score: 250
  • Evalue 2.20e-63
Membrane protein similarity KEGG
DB: KEGG
  • Identity: 61.5
  • Coverage: 200.0
  • Bit_score: 238
  • Evalue 3.00e-60

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Loktanella cinnabarina → Loktanella → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1161
GTGAAGCGTTTGGGGTTCAACGGGAGGGCCGCCCTGGCCGGGTTGGCCCTTCTGCTTTCCTGGCTGCTCGCAGGCAGGGCGGAGGCGCATCCGGCGCAGTTCACCACGCTCCACGTAAGACTGCATGCGGACGGCGAATTCGACGCCTCGCTGAACATTGACATTCTCTCCTTCGCGCTGGGCGAAACTTCCGCCAACACCAGCAACGAGGAACTGGAAACGTTGCTCAACGGTCCGCGCGCCAGCCTGGCCGCCAACCTCGCGGATGCGGACGAACATTTTCGCGAGGAAGTCGTCTTCCGCACCGACGCCGGCAACGCCGGCATAACGCGCTGGAAACTGCCCGGGCTGGCGGACGTGGATGCGGTTTTGGCGCAGCATTTGCGGCCGCGCATCCTGATGCCCGGAGAAATCCGTTTTTCCGGAAAGCTGCCCGCCAAGGCATCCAAAATCTCCATCCGCCTGCCCTATGTTTTGGGGAACACGGTGCAAATGCTTGAGCTGCCCGATGGCAACAGCCATGTGGAACCGGTCACCGCCGGCAATTATTCCAGCCAGGTGCCCATCGCGCTGAAGGCGCCGGGAAAATGGGATCACTTGGTGGCCATCGGACGCTACATCCTGGTTGGCTTTCTCCACATCATTCCGGAGGGAACGGATCACATTTTATTTGTGCTGGGACTGTTTCTGTTCAGCACGCGGCTCAAACCCTTGCTGTGGCAGGTTTCCGCCTTTACGCTGGCCCATTCCATCACGCTGGGGCTCGCGCTTTACGGCGTGGTCCGCCTGCCCGCCACCATCACCGAACCGCTCATTGCCGCCTCGATTGTTTTCGTGGCGGTGGAAAACATTTTTGGCAACCGGCTGCAACCGTGGCGCTATGCCATCGTTTTTTGTTTTGGCCTGGTTCATGGCCTGGGCTTTGCGAGCGCGTTCGCCAACGTCGGCCTGCCGCGTCAGGACTTTTTGATCGGCCTGGTCGGCTTCAATCTCGGCGTGGAGTGCGGCCAACTGGCGGTCCTCCTCGGCGCCTTCCTCCTCGTCGGCTGGTTTCACCGGCGGCCGTGGTATCGGAAAGTCATTGTCATTCCGGCTTCCTCCGCCATTGCTCTCGTGGCCTTGTTCTGGACCATCCAGCGCATCTTCTGGCCGAATTTCTGA
PROTEIN sequence
Length: 387
VKRLGFNGRAALAGLALLLSWLLAGRAEAHPAQFTTLHVRLHADGEFDASLNIDILSFALGETSANTSNEELETLLNGPRASLAANLADADEHFREEVVFRTDAGNAGITRWKLPGLADVDAVLAQHLRPRILMPGEIRFSGKLPAKASKISIRLPYVLGNTVQMLELPDGNSHVEPVTAGNYSSQVPIALKAPGKWDHLVAIGRYILVGFLHIIPEGTDHILFVLGLFLFSTRLKPLLWQVSAFTLAHSITLGLALYGVVRLPATITEPLIAASIVFVAVENIFGNRLQPWRYAIVFCFGLVHGLGFASAFANVGLPRQDFLIGLVGFNLGVECGQLAVLLGAFLLVGWFHRRPWYRKVIVIPASSAIALVALFWTIQRIFWPNF*