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berkeley_reactor_200306_planktonic_scaffold_78559

Search features with annotation key words

Displaying items 1-30 of 316 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_78559_1
unknown

Not on your lists

2..94
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

223..681
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSW4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57073.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acetolactate synthase
berkeley_reactor_200306_planktonic_scaffold_78559_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1004..1414)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61078.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1656..2360
DNA (705bp) protein (235aa)
Alanine racemase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM8_9BACT
Alanine racemase domain protein {ECO:0000313|EMBL:EEF61079.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alanine racemase
berkeley_reactor_200306_planktonic_scaffold_78559_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2400..2729
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61080.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3755..4093)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYG6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20507.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_78559_7
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4248..5693
DNA (1446bp) protein (482aa)
GntR family transcriptional regulator id=12556353 bin=CNBR_ACIDO species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Transcriptional regulator, GntR family domain protein {ECO:0000313|EMBL:KFE66042.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_78559_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5702..6178
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037B6633
cupin
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_78559_9
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(6315..7172)
DNA (858bp) protein (286aa)
Putative ARAC-type regulatory protein id=4670630 bin=GWF2_Planctomycetes_42_9 species=Photobacterium damselae genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
putative transcriptional regulator
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_78559_10
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

7274..8347
DNA (1074bp) protein (358aa)
PTS system, fructose subfamily, IIC subunit id=4670632 bin=GWF2_Planctomycetes_42_9 species=Tolumonas auensis genus=Tolumonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
PTS system fructose subfamily transporter subunit IIC
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_78559_11
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

8355..8651
DNA (297bp) protein (99aa)
frwB; PTS system, fructose-like-2 IIB component 1 (EC:2.7.1.69)
PTS system, fructose-specific, IIB subunnit id=4670634 bin=GWF2_Planctomycetes_42_9 species=Tolumonas auensis genus=Tolumonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_78559_12
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8662..11166
DNA (2505bp) protein (835aa)
Multiphosphoryl transfer protein 2 n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WKI4_KLEOK
multifunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA
Multiphosphoryl transfer protein 2 {ECO:0000313|EMBL:EWF68447.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
berkeley_reactor_200306_planktonic_scaffold_78559_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

11233..15612
DNA (4380bp) protein (1460aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037BCD8E
Alpha-mannosidase {ECO:0000313|EMBL:AIE84359.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
alpha-mannosidase
berkeley_reactor_200306_planktonic_scaffold_78559_14
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15612..16772
DNA (1161bp) protein (387aa)
Membrane protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AMP8_9RHOB
Membrane protein {ECO:0000313|EMBL:GAD56013.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
Membrane protein
berkeley_reactor_200306_planktonic_scaffold_78559_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(16983..17264)
DNA (282bp) protein (94aa)
50S ribosomal protein L23 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFM9_9BACT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LSU ribosomal protein L23P
berkeley_reactor_200306_planktonic_scaffold_78559_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(17267..17896)
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN0_9BACT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplD; 50S ribosomal protein L4
berkeley_reactor_200306_planktonic_scaffold_78559_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(17907..18611)
DNA (705bp) protein (235aa)
50S ribosomal protein L3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN1_9BACT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L3
berkeley_reactor_200306_planktonic_scaffold_78559_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(18622..18927)
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN2_9BACT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rpsJ; 30S ribosomal protein S10
berkeley_reactor_200306_planktonic_scaffold_78559_19
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19234..19509
DNA (276bp) protein (92aa)
Tax=RBG_16_Anaeromyxobacter_69_14_curated
berkeley_reactor_200306_planktonic_scaffold_78559_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(19541..23692)
DNA (4152bp) protein (1384aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI000379D15F
APHP domain protein {ECO:0000313|EMBL:EEF58580.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_21
unknown

Not on your lists

24259..24996
DNA (738bp) protein (246aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_22
unknown

Not on your lists

25388..26014
DNA (627bp) protein (209aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26182..28368)
DNA (2187bp) protein (729aa)
Elongation factor G n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN3_9BACT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
fusA; translation elongation factor G, GTPase
berkeley_reactor_200306_planktonic_scaffold_78559_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(28451..28924)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN4_9BACT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
30S ribosomal protein S7
berkeley_reactor_200306_planktonic_scaffold_78559_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(28945..29334)
DNA (390bp) protein (130aa)
30S ribosomal protein S12 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN5_9BACT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
30S ribosomal protein S12
berkeley_reactor_200306_planktonic_scaffold_78559_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(29616..30575)
DNA (960bp) protein (320aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transaldolase (EC:2.2.1.2)
Transaldolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR4_9BACT
berkeley_reactor_200306_planktonic_scaffold_78559_27
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists

comp(30907..32193)
DNA (1287bp) protein (429aa)
Nucleotide sugar dehydrogenase id=3604337 bin=GWF2_Lentisphaerae_52_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
UDP-N-acetyl-D-glucosamine dehydrogenase
Tax=GWF2_Lentisphaerae_52_8_curated
berkeley_reactor_200306_planktonic_scaffold_78559_28
R_OD1_Wolfebacteria_47_17b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(32496..32816)
DNA (321bp) protein (107aa)
Cytochrome c class I n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZK3_OPITP
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_47_17b_curated
berkeley_reactor_200306_planktonic_scaffold_78559_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

32951..34075
DNA (1125bp) protein (375aa)
Monogalactosyldiacylglycerol synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFH3_9BACT
Monogalactosyldiacylglycerol synthase {ECO:0000313|EMBL:EEF61337.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative monogalactosyldiacylglycerol (MGDG) synthase
berkeley_reactor_200306_planktonic_scaffold_78559_30
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

34072..34434
DNA (363bp) protein (121aa)
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
Displaying items 1-30 of 316 in total

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