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berkeley_reactor_200306_planktonic_scaffold_78559

Search features with annotation key words

Displaying items 31-60 of 316 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_78559_31
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

34505..37186
DNA (2682bp) protein (894aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LKM0_9BACE
Beta-galactosidase
Beta-galactosidase {ECO:0000313|EMBL:AIE84153.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_78559_32
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(37357..37794)
DNA (438bp) protein (146aa)
id=3449924 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_78559_33
Hydrogenobacter thermophilus, Hydrogenobacter, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

38636..40465
DNA (1830bp) protein (610aa)
Cl-channel voltage-gated family protein n=1 Tax=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) RepID=D3DK90_HYDTT
putative chloride channel
Putative chloride channel {ECO:0000313|EMBL:BAI70242.1}; TaxID=608538 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenobacter.;" source="Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6).;"
berkeley_reactor_200306_planktonic_scaffold_78559_34
unknown

Not on your lists

40820..41443
DNA (624bp) protein (208aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_35
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41607..42173
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035F0A65
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:EIL96258.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
isoprenylcysteine carboxyl methyltransferase
berkeley_reactor_200306_planktonic_scaffold_78559_36
R_RIF_OD1_09_44_41, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(42183..42920)
DNA (738bp) protein (246aa)
Nucleoside triphosphate hydrolase domain-containing protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F6Y0_9NOCA
nucleoside triphosphate hydrolase domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_44_41_curated
berkeley_reactor_200306_planktonic_scaffold_78559_37
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(43098..44159)
DNA (1062bp) protein (354aa)
Type IV pilus retraction protein PilT id=3730157 bin=GWF2_Planctomycetes_50_10 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
twitching motility protein PilT
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_78559_38
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(44156..44935)
DNA (780bp) protein (260aa)
TPR repeat id=3864114 bin=GWF2_Planctomycetes_42_9 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_78559_39
unknown

Not on your lists

comp(44932..45837)
DNA (906bp) protein (302aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_40
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(45872..46072)
DNA (201bp) protein (67aa)
id=3730162 bin=GWF2_Planctomycetes_50_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_78559_41
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(46161..46637)
DNA (477bp) protein (159aa)
id=3864119 bin=GWF2_Planctomycetes_42_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=GWF2_Planctomycetes_42_9_curated
berkeley_reactor_200306_planktonic_scaffold_78559_42
unknown

Not on your lists

comp(46645..46956)
DNA (312bp) protein (104aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_43
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(47092..48645)
DNA (1554bp) protein (518aa)
AAA ATPase central domain protein id=3730165 bin=GWF2_Planctomycetes_50_10 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
ATPases of the AAA+ class
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_78559_44
unknown

Not on your lists

comp(48623..48919)
DNA (297bp) protein (99aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_45
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(48916..49872)
DNA (957bp) protein (319aa)
Pyruvate formate lyase activating protein-like protein id=3730167 bin=GWF2_Planctomycetes_50_10 species=Pyrococcus yayanosii genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
radical SAM domain-containing protein
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_78559_46
unknown

Not on your lists

comp(49876..50532)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=actinobacterium SCGC AAA023-D18 RepID=UPI0003814E5A
berkeley_reactor_200306_planktonic_scaffold_78559_47
unknown

Not on your lists

comp(50529..50756)
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_48

Not on your lists

comp(50769..51329)
DNA (561bp) protein (187aa)
RNA polymerase sigma70 factor n=1 Tax=Streptomyces sp. ScaeMP-e10 RepID=UPI0003627172
Marine sediment metagenome DNA, contig: S01H1_L01884 {ECO:0000313|EMBL:GAF85437.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_planktonic_scaffold_78559_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51393..52214)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSI7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57187.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(52461..53015)
DNA (555bp) protein (185aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGZ3_9BACT
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EEF60914.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
berkeley_reactor_200306_planktonic_scaffold_78559_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

53244..53777
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHS1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60649.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_52
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(53990..54733)
DNA (744bp) protein (248aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBR7_9BACT
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EDY16096.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
berkeley_reactor_200306_planktonic_scaffold_78559_53
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(54883..55644)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JIS9_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY85009.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hemolysin
berkeley_reactor_200306_planktonic_scaffold_78559_54
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(55690..56403)
DNA (714bp) protein (238aa)
Riboflavin synthase, alpha subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNY9_9BACT
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EEF58455.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
riboflavin synthase subunit alpha
berkeley_reactor_200306_planktonic_scaffold_78559_55
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56431..57642)
DNA (1212bp) protein (404aa)
ribD; putative 5-amino-6-(5-phosphoribosylamino) uracil reductase / diaminohydroxyphosphoribosylaminopyrimi dine deaminase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNZ0_9BACT
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_trna_1
unknown

Not on your lists

57787..57858
DNA (72bp)
transferRNA Val
berkeley_reactor_200306_planktonic_scaffold_78559_56
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(57793..59079)
DNA (1287bp) protein (429aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL57_9BACT
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_78559_57
unknown

Not on your lists

comp(59082..59267)
DNA (186bp) protein (62aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_58
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(59264..59797)
DNA (534bp) protein (178aa)
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_78559_59
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

60288..61454
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI0003459DB5
filamentation induced by cAMP protein fic
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Displaying items 31-60 of 316 in total

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