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berkeley_reactor_200306_planktonic_scaffold_78559

Search features with annotation key words

Displaying items 121-150 of 316 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_78559_119
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(144663..145586)
DNA (924bp) protein (308aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPD6_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF58276.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
soluble lytic murein transglycosylase
berkeley_reactor_200306_planktonic_scaffold_78559_120
Rhodopirellula sp. SWK7, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

145612..147072
DNA (1461bp) protein (487aa)
Rhamnulokinase n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5T1Z6_9PLAN
Rhamnulokinase {ECO:0000313|EMBL:EMI43119.1}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;"
pentulose/hexulose kinase
berkeley_reactor_200306_planktonic_scaffold_78559_121
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

147120..147977
DNA (858bp) protein (286aa)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EEF60180.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EEF60180.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIV3_9BACT
berkeley_reactor_200306_planktonic_scaffold_78559_122
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

148081..149058
DNA (978bp) protein (326aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
Biotin/acetyl-CoA-carboxylase ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIV4_9BACT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_123
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

149055..149807
DNA (753bp) protein (251aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Type III pantothenate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIV5_9BACT
Pantothenate kinase type III
berkeley_reactor_200306_planktonic_scaffold_78559_124
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

150004..151329
DNA (1326bp) protein (442aa)
LemA family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSD0_OPITP
LemA family protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_78559_125
unknown

Not on your lists

comp(151227..151475)
DNA (249bp) protein (83aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_126
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

151481..151954
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11X79_CYTH3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG57987.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
berkeley_reactor_200306_planktonic_scaffold_78559_127
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(152066..154432)
DNA (2367bp) protein (789aa)
Planctomycete cytochrome C n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJY0_9BACT
Planctomycete cytochrome C {ECO:0000313|EMBL:EEF59803.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_128
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(154450..155241)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000376156D
cytochrome C family protein
Cytochrome C family protein {ECO:0000313|EMBL:ACB75865.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_78559_129
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(155241..156137)
DNA (897bp) protein (299aa)
Electron transport protein SCO1/SenC (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT57_9BACT
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EEF56973.1}; Flags: Precursor; Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
electron transport protein SCO1/SenC
berkeley_reactor_200306_planktonic_scaffold_78559_130
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(156156..157037)
DNA (882bp) protein (294aa)
beta-glycosidase-like protein (EC:3.2.1.-)
Blue (Type 1) copper domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJY1_9BACT
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:EEF59804.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_131
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

157191..157697
DNA (507bp) protein (169aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC57_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF62525.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_78559_132
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

157694..158446
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC56_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62524.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_133
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(158735..159571)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC58_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62526.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_134
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(159695..160261)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG00_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61162.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_135
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(160258..160797)
DNA (540bp) protein (180aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Signal peptidase I n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFZ9_9BACT
signal peptidase I
berkeley_reactor_200306_planktonic_scaffold_78559_136
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160903..162636
DNA (1734bp) protein (578aa)
Kef-type K+ transport system, membrane component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YGF6_9BRAD
Membrane protein {ECO:0000313|EMBL:KIZ47419.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
putative glutathione-regulated potassium-efflux system protein
berkeley_reactor_200306_planktonic_scaffold_78559_137

Not on your lists

162682..164337
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2Y8I5_9ACTO
Marine sediment metagenome DNA, contig: S01H1_S20721 {ECO:0000313|EMBL:GAG19192.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_138
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

164447..165232
DNA (786bp) protein (262aa)
Inositol-phosphate phosphatase {ECO:0000313|EMBL:EEF58621.1}; EC=3.1.3.25 {ECO:0000313|EMBL:EEF58621.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Inositol-phosphate phosphatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNG2_9BACT
inositol monophosphatase
berkeley_reactor_200306_planktonic_scaffold_78559_139
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

165264..167027
DNA (1764bp) protein (588aa)
Peptidyl-prolyl cis-trans isomerase cyclophilin type {ECO:0000313|EMBL:EMI21703.1}; EC=5.2.1.8 {ECO:0000313|EMBL:EMI21703.1};; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
cyclophilin type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase cyclophilin type n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RQT4_9PLAN
berkeley_reactor_200306_planktonic_scaffold_78559_140
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(167092..167772)
DNA (681bp) protein (227aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Non-canonical purine NTP pyrophosphatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNG3_9BACT
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
berkeley_reactor_200306_planktonic_scaffold_78559_141
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

167846..169870
DNA (2025bp) protein (675aa)
alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Alpha-galactosidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4X7_PALPW
berkeley_reactor_200306_planktonic_scaffold_78559_142
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

170287..172122
DNA (1836bp) protein (612aa)
GTP-binding protein TypA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP09_9BACT
GTP-binding protein TypA {ECO:0000313|EMBL:EEF58475.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GTP-binding protein
berkeley_reactor_200306_planktonic_scaffold_78559_143
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(172196..173830)
DNA (1635bp) protein (545aa)
Putative PAS/PAC sensor protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC62_9BACT
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:EEF62530.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PAS/PAC sensor protein
berkeley_reactor_200306_planktonic_scaffold_78559_144
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

173992..176091
DNA (2100bp) protein (700aa)
Small GTP-binding protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN57_OPITP
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:ACB73426.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_78559_145
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

176253..180461
DNA (4209bp) protein (1403aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIN7_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF60300.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell wall/surface repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_78559_146
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

comp(180769..181023)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas piscicida JCM 20779 RepID=U1LGK9_PSEO7
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
berkeley_reactor_200306_planktonic_scaffold_78559_147
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

181242..182594
DNA (1353bp) protein (451aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000366A7ED
dimethylallyladenosine tRNA methylthiotransferase
berkeley_reactor_200306_planktonic_scaffold_78559_148
Cylindrospermopsis raciborskii, Cylindrospermopsis, Nostocales, Cyanobacteria, Bacteria

Not on your lists

182637..182915
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Cylindrospermopsis raciborskii CS-505 RepID=D4TE53_9NOST
Uncharacterized protein {ECO:0000313|EMBL:EFA70836.1}; TaxID=533240 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermopsis.;" source="Cylindrospermopsis raciborskii CS-505.;"
hypothetical protein
Displaying items 121-150 of 316 in total

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